Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3891 and Atu3892 are separated by 187 nucleotides Atu3892 and Atu3893 are separated by 2 nucleotides Atu3893 and Atu3894 are separated by 3 nucleotides
Atu3891: Atu3891 - hypothetical protein, at 986,083 to 987,804
Atu3891
Atu3892: Atu3892 - hypothetical protein, at 987,992 to 988,285
Atu3892
Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202
Atu3893
Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072
Atu3894
Position (kb) 987
988
989 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 987.086 kb on - strand, within Atu3891 at 987.147 kb on + strand, within Atu3891 at 987.155 kb on - strand, within Atu3891 at 987.211 kb on - strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.309 kb on - strand, within Atu3891 at 987.330 kb on + strand, within Atu3891 at 987.349 kb on - strand, within Atu3891 at 987.393 kb on + strand, within Atu3891 at 987.471 kb on - strand, within Atu3891 at 987.521 kb on - strand, within Atu3891 at 987.532 kb on - strand, within Atu3891 at 987.667 kb on - strand at 987.725 kb on + strand at 987.726 kb on - strand at 987.821 kb on - strand at 987.901 kb on - strand at 987.989 kb on + strand at 988.016 kb on + strand at 988.016 kb on + strand at 988.059 kb on - strand, within Atu3892 at 988.076 kb on + strand, within Atu3892 at 988.125 kb on - strand, within Atu3892 at 988.193 kb on - strand, within Atu3892 at 988.247 kb on + strand, within Atu3892 at 988.255 kb on - strand, within Atu3892 at 988.287 kb on + strand at 988.294 kb on - strand at 988.294 kb on - strand at 988.317 kb on - strand at 988.389 kb on + strand, within Atu3893 at 988.397 kb on - strand, within Atu3893 at 988.416 kb on + strand, within Atu3893 at 988.490 kb on + strand, within Atu3893 at 988.671 kb on + strand, within Atu3893 at 988.708 kb on - strand, within Atu3893 at 988.761 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.870 kb on + strand, within Atu3893 at 988.904 kb on + strand, within Atu3893 at 988.924 kb on + strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.973 kb on + strand, within Atu3893 at 989.050 kb on + strand, within Atu3893 at 989.051 kb on + strand, within Atu3893 at 989.105 kb on + strand, within Atu3893 at 989.114 kb on + strand at 989.123 kb on + strand at 989.124 kb on + strand at 989.125 kb on + strand at 989.130 kb on + strand at 989.187 kb on + strand at 989.195 kb on - strand at 989.195 kb on - strand at 989.202 kb on + strand at 989.232 kb on + strand at 989.235 kb on - strand at 989.237 kb on + strand at 989.237 kb on + strand at 989.240 kb on - strand at 989.245 kb on - strand at 989.246 kb on + strand at 989.247 kb on + strand at 989.247 kb on - strand at 989.252 kb on + strand at 989.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 987,086 - Atu3891 0.58 +0.6 987,147 + Atu3891 0.62 -0.8 987,155 - Atu3891 0.62 +0.2 987,211 - Atu3891 0.66 +0.8 987,228 + Atu3891 0.66 +0.7 987,228 + Atu3891 0.66 -1.6 987,250 - Atu3891 0.68 -1.3 987,250 - Atu3891 0.68 +1.9 987,250 - Atu3891 0.68 +1.4 987,250 - Atu3891 0.68 -3.3 987,250 - Atu3891 0.68 -3.2 987,309 - Atu3891 0.71 -1.6 987,330 + Atu3891 0.72 +0.5 987,349 - Atu3891 0.74 +1.3 987,393 + Atu3891 0.76 +1.2 987,471 - Atu3891 0.81 -2.3 987,521 - Atu3891 0.84 +0.2 987,532 - Atu3891 0.84 +0.1 987,667 - -0.6 987,725 + -1.8 987,726 - -0.9 987,821 - +1.2 987,901 - -0.3 987,989 + -1.1 988,016 + -1.3 988,016 + +1.4 988,059 - Atu3892 0.23 +0.3 988,076 + Atu3892 0.29 +1.2 988,125 - Atu3892 0.45 +0.3 988,193 - Atu3892 0.68 -0.3 988,247 + Atu3892 0.87 -1.4 988,255 - Atu3892 0.89 +0.2 988,287 + -4.0 988,294 - +0.6 988,294 - -0.3 988,317 - +0.4 988,389 + Atu3893 0.11 -0.1 988,397 - Atu3893 0.12 -3.0 988,416 + Atu3893 0.14 +2.5 988,490 + Atu3893 0.22 +0.3 988,671 + Atu3893 0.42 -1.9 988,708 - Atu3893 0.46 +0.5 988,761 + Atu3893 0.52 -2.9 988,828 + Atu3893 0.59 +0.4 988,828 + Atu3893 0.59 -1.1 988,870 + Atu3893 0.64 -0.0 988,904 + Atu3893 0.67 -3.7 988,924 + Atu3893 0.70 -0.2 988,950 - Atu3893 0.72 -0.4 988,950 - Atu3893 0.72 -0.5 988,973 + Atu3893 0.75 +0.9 989,050 + Atu3893 0.83 +1.7 989,051 + Atu3893 0.83 -3.1 989,105 + Atu3893 0.89 +1.6 989,114 + +1.3 989,123 + -2.3 989,124 + +4.1 989,125 + +2.5 989,130 + +0.3 989,187 + -0.1 989,195 - -2.0 989,195 - +0.0 989,202 + -0.3 989,232 + -0.5 989,235 - -2.0 989,237 + -0.7 989,237 + +0.7 989,240 - -1.9 989,245 - -0.5 989,246 + -3.3 989,247 + -1.4 989,247 - +0.6 989,252 + -0.0 989,252 + -0.1
Or see this region's nucleotide sequence