Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3886 and Atu3887 are separated by 379 nucleotides Atu3887 and Atu3888 are separated by 62 nucleotides
Atu3886: Atu3886 - lysophospholipase, at 980,660 to 981,601
Atu3886
Atu3887: Atu3887 - small heat shock protein, at 981,981 to 982,463
Atu3887
Atu3888: Atu3888 - hypothetical protein, at 982,526 to 983,545
Atu3888
Position (kb)
981
982
983 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 980.993 kb on - strand, within Atu3886 at 981.034 kb on + strand, within Atu3886 at 981.051 kb on + strand, within Atu3886 at 981.054 kb on - strand, within Atu3886 at 981.054 kb on - strand, within Atu3886 at 981.079 kb on - strand, within Atu3886 at 981.079 kb on - strand, within Atu3886 at 981.151 kb on + strand, within Atu3886 at 981.366 kb on - strand, within Atu3886 at 981.488 kb on - strand, within Atu3886 at 981.504 kb on + strand, within Atu3886 at 981.514 kb on + strand at 981.544 kb on - strand at 981.569 kb on + strand at 981.577 kb on - strand at 981.644 kb on - strand at 981.770 kb on + strand at 981.857 kb on - strand at 981.860 kb on + strand at 981.891 kb on + strand at 981.904 kb on - strand at 981.979 kb on - strand at 982.076 kb on - strand, within Atu3887 at 982.082 kb on - strand, within Atu3887 at 982.099 kb on - strand, within Atu3887 at 982.156 kb on + strand, within Atu3887 at 982.372 kb on + strand, within Atu3887 at 982.372 kb on + strand, within Atu3887 at 982.457 kb on + strand at 982.527 kb on - strand at 982.610 kb on + strand at 982.649 kb on + strand, within Atu3888 at 982.775 kb on - strand, within Atu3888 at 982.833 kb on + strand, within Atu3888 at 982.895 kb on - strand, within Atu3888 at 982.923 kb on + strand, within Atu3888 at 982.959 kb on + strand, within Atu3888 at 983.021 kb on + strand, within Atu3888 at 983.022 kb on + strand, within Atu3888 at 983.070 kb on - strand, within Atu3888 at 983.123 kb on - strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.215 kb on - strand, within Atu3888 at 983.317 kb on + strand, within Atu3888 at 983.325 kb on - strand, within Atu3888 at 983.357 kb on + strand, within Atu3888
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 980,993 - Atu3886 0.35 -1.2 981,034 + Atu3886 0.40 -1.4 981,051 + Atu3886 0.42 -0.0 981,054 - Atu3886 0.42 -0.3 981,054 - Atu3886 0.42 -0.2 981,079 - Atu3886 0.44 +2.9 981,079 - Atu3886 0.44 -0.1 981,151 + Atu3886 0.52 +0.4 981,366 - Atu3886 0.75 +2.6 981,488 - Atu3886 0.88 +0.6 981,504 + Atu3886 0.90 -0.3 981,514 + +1.9 981,544 - +4.2 981,569 + -0.6 981,577 - -1.7 981,644 - +1.9 981,770 + -4.1 981,857 - -1.1 981,860 + -1.1 981,891 + -0.8 981,904 - +2.1 981,979 - +1.6 982,076 - Atu3887 0.20 +1.5 982,082 - Atu3887 0.21 +0.6 982,099 - Atu3887 0.24 -0.3 982,156 + Atu3887 0.36 +2.8 982,372 + Atu3887 0.81 +0.3 982,372 + Atu3887 0.81 +0.3 982,457 + +1.1 982,527 - -2.3 982,610 + -1.2 982,649 + Atu3888 0.12 +0.8 982,775 - Atu3888 0.24 -3.4 982,833 + Atu3888 0.30 -0.3 982,895 - Atu3888 0.36 -1.9 982,923 + Atu3888 0.39 -0.3 982,959 + Atu3888 0.42 -3.7 983,021 + Atu3888 0.49 -0.2 983,022 + Atu3888 0.49 -2.2 983,070 - Atu3888 0.53 -0.8 983,123 - Atu3888 0.59 -1.1 983,192 + Atu3888 0.65 -2.7 983,192 + Atu3888 0.65 -0.3 983,192 + Atu3888 0.65 -2.2 983,212 + Atu3888 0.67 -4.7 983,212 + Atu3888 0.67 +0.2 983,215 - Atu3888 0.68 +0.8 983,317 + Atu3888 0.78 -2.4 983,325 - Atu3888 0.78 -0.3 983,357 + Atu3888 0.81 -1.3
Or see this region's nucleotide sequence