Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3797 and Atu3798 are separated by 305 nucleotides Atu3798 and Atu3799 are separated by 35 nucleotides Atu3799 and Atu3800 are separated by 283 nucleotides
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Atu3798: Atu3798 - TetR family transcriptional regulator, at 893,804 to 894,418
Atu3798
Atu3799: Atu3799 - GntR family transcriptional regulator, at 894,454 to 895,437
Atu3799
Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758
Atu3800
Position (kb) 894
895
896 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 893.505 kb on + strand at 893.634 kb on + strand at 893.721 kb on + strand at 893.723 kb on + strand at 893.723 kb on + strand at 893.729 kb on - strand at 893.749 kb on - strand at 893.766 kb on + strand at 893.870 kb on + strand, within Atu3798 at 893.945 kb on - strand, within Atu3798 at 893.948 kb on + strand, within Atu3798 at 893.986 kb on + strand, within Atu3798 at 894.051 kb on + strand, within Atu3798 at 894.294 kb on - strand, within Atu3798 at 894.323 kb on - strand, within Atu3798 at 894.384 kb on + strand at 894.384 kb on + strand at 894.392 kb on - strand at 894.402 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.485 kb on + strand at 894.487 kb on + strand at 894.591 kb on + strand, within Atu3799 at 894.596 kb on + strand, within Atu3799 at 894.601 kb on + strand, within Atu3799 at 894.690 kb on + strand, within Atu3799 at 894.854 kb on - strand, within Atu3799 at 894.878 kb on - strand, within Atu3799 at 894.893 kb on - strand, within Atu3799 at 894.916 kb on + strand, within Atu3799 at 894.916 kb on + strand, within Atu3799 at 894.924 kb on - strand, within Atu3799 at 894.924 kb on - strand, within Atu3799 at 894.924 kb on - strand, within Atu3799 at 894.971 kb on - strand, within Atu3799 at 895.040 kb on - strand, within Atu3799 at 895.064 kb on + strand, within Atu3799 at 895.084 kb on + strand, within Atu3799 at 895.087 kb on - strand, within Atu3799 at 895.199 kb on - strand, within Atu3799 at 895.199 kb on - strand, within Atu3799 at 895.394 kb on - strand at 895.397 kb on + strand at 895.405 kb on - strand at 895.439 kb on + strand at 895.447 kb on - strand at 895.464 kb on - strand at 895.484 kb on + strand at 895.602 kb on + strand at 895.750 kb on + strand at 895.750 kb on + strand at 895.758 kb on - strand at 895.758 kb on - strand at 895.882 kb on + strand, within Atu3800 at 895.899 kb on - strand, within Atu3800 at 895.899 kb on - strand, within Atu3800 at 895.927 kb on + strand, within Atu3800 at 895.941 kb on + strand, within Atu3800 at 895.941 kb on + strand, within Atu3800 at 896.033 kb on + strand, within Atu3800 at 896.046 kb on - strand, within Atu3800 at 896.080 kb on - strand, within Atu3800 at 896.082 kb on + strand, within Atu3800 at 896.101 kb on + strand, within Atu3800 at 896.101 kb on + strand, within Atu3800 at 896.144 kb on + strand, within Atu3800 at 896.144 kb on + strand, within Atu3800 at 896.199 kb on - strand, within Atu3800 at 896.199 kb on - strand, within Atu3800 at 896.251 kb on - strand, within Atu3800 at 896.258 kb on - strand, within Atu3800 at 896.275 kb on + strand, within Atu3800 at 896.275 kb on + strand, within Atu3800 at 896.362 kb on + strand, within Atu3800 at 896.362 kb on + strand, within Atu3800 at 896.370 kb on - strand, within Atu3800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 893,505 + -0.4 893,634 + -0.5 893,721 + -1.4 893,723 + -0.3 893,723 + +0.7 893,729 - -0.1 893,749 - -2.6 893,766 + +0.6 893,870 + Atu3798 0.11 -0.5 893,945 - Atu3798 0.23 -0.7 893,948 + Atu3798 0.23 -1.5 893,986 + Atu3798 0.30 -2.0 894,051 + Atu3798 0.40 -1.0 894,294 - Atu3798 0.80 +0.1 894,323 - Atu3798 0.84 -1.1 894,384 + -0.2 894,384 + -2.5 894,392 - -1.4 894,402 - +0.5 894,415 - -0.8 894,415 - +0.1 894,415 - -2.0 894,415 - -0.3 894,415 - -0.1 894,485 + +2.7 894,487 + -2.4 894,591 + Atu3799 0.14 +0.1 894,596 + Atu3799 0.14 -4.0 894,601 + Atu3799 0.15 +0.6 894,690 + Atu3799 0.24 -1.4 894,854 - Atu3799 0.41 +0.5 894,878 - Atu3799 0.43 +1.8 894,893 - Atu3799 0.45 -2.8 894,916 + Atu3799 0.47 +0.1 894,916 + Atu3799 0.47 -1.7 894,924 - Atu3799 0.48 -3.1 894,924 - Atu3799 0.48 -2.8 894,924 - Atu3799 0.48 -0.1 894,971 - Atu3799 0.53 -0.7 895,040 - Atu3799 0.60 +1.5 895,064 + Atu3799 0.62 -0.6 895,084 + Atu3799 0.64 +0.5 895,087 - Atu3799 0.64 -1.0 895,199 - Atu3799 0.76 +0.7 895,199 - Atu3799 0.76 -0.4 895,394 - -0.4 895,397 + +1.6 895,405 - +1.3 895,439 + -3.5 895,447 - -0.4 895,464 - -1.6 895,484 + +2.6 895,602 + +0.9 895,750 + -0.7 895,750 + +0.7 895,758 - -2.0 895,758 - +0.6 895,882 + Atu3800 0.16 -0.3 895,899 - Atu3800 0.17 +0.7 895,899 - Atu3800 0.17 -0.1 895,927 + Atu3800 0.20 -0.3 895,941 + Atu3800 0.21 -2.4 895,941 + Atu3800 0.21 +0.3 896,033 + Atu3800 0.30 -1.4 896,046 - Atu3800 0.31 -3.3 896,080 - Atu3800 0.35 -1.6 896,082 + Atu3800 0.35 -0.1 896,101 + Atu3800 0.37 -0.7 896,101 + Atu3800 0.37 +0.8 896,144 + Atu3800 0.41 -2.7 896,144 + Atu3800 0.41 +1.3 896,199 - Atu3800 0.46 +2.6 896,199 - Atu3800 0.46 +0.5 896,251 - Atu3800 0.51 -1.7 896,258 - Atu3800 0.52 +0.7 896,275 + Atu3800 0.53 +1.5 896,275 + Atu3800 0.53 +0.7 896,362 + Atu3800 0.62 +0.7 896,362 + Atu3800 0.62 -1.6 896,370 - Atu3800 0.63 +0.2
Or see this region's nucleotide sequence