Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3482 and Atu3483 overlap by 4 nucleotides Atu3483 and Atu3484 are separated by 34 nucleotides Atu3484 and Atu3485 are separated by 50 nucleotides
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Atu3483: Atu3483 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 532,015 to 532,854
Atu3483
Atu3484: Atu3484 - hypothetical protein, at 532,889 to 534,181
Atu3484
Atu3485: Atu3485 - short chain dehydrogenase, at 534,232 to 536,328
Atu3485
Position (kb) 532
533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.923 kb on - strand, within Atu3482 at 532.099 kb on - strand, within Atu3483 at 532.169 kb on + strand, within Atu3483 at 532.320 kb on + strand, within Atu3483 at 532.479 kb on - strand, within Atu3483 at 532.609 kb on - strand, within Atu3483 at 532.767 kb on + strand, within Atu3483 at 533.076 kb on + strand, within Atu3484 at 533.076 kb on + strand, within Atu3484 at 533.084 kb on - strand, within Atu3484 at 533.228 kb on - strand, within Atu3484 at 533.474 kb on + strand, within Atu3484 at 533.480 kb on + strand, within Atu3484 at 533.483 kb on - strand, within Atu3484 at 533.556 kb on + strand, within Atu3484 at 533.558 kb on + strand, within Atu3484 at 533.940 kb on - strand, within Atu3484 at 533.959 kb on + strand, within Atu3484 at 533.972 kb on - strand, within Atu3484 at 533.995 kb on + strand, within Atu3484 at 534.017 kb on + strand, within Atu3484 at 534.017 kb on - strand, within Atu3484 at 534.492 kb on + strand, within Atu3485 at 534.551 kb on + strand, within Atu3485 at 534.675 kb on + strand, within Atu3485 at 534.684 kb on - strand, within Atu3485 at 534.847 kb on - strand, within Atu3485 at 534.907 kb on + strand, within Atu3485 at 534.958 kb on + strand, within Atu3485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 531,923 - Atu3482 0.89 +0.6 532,099 - Atu3483 0.10 -1.2 532,169 + Atu3483 0.18 -2.8 532,320 + Atu3483 0.36 +0.2 532,479 - Atu3483 0.55 -0.6 532,609 - Atu3483 0.71 -0.2 532,767 + Atu3483 0.90 -1.3 533,076 + Atu3484 0.14 +0.2 533,076 + Atu3484 0.14 +1.9 533,084 - Atu3484 0.15 -1.4 533,228 - Atu3484 0.26 -1.0 533,474 + Atu3484 0.45 +1.2 533,480 + Atu3484 0.46 -0.3 533,483 - Atu3484 0.46 +1.2 533,556 + Atu3484 0.52 +2.1 533,558 + Atu3484 0.52 -1.1 533,940 - Atu3484 0.81 -2.8 533,959 + Atu3484 0.83 +0.5 533,972 - Atu3484 0.84 +2.7 533,995 + Atu3484 0.86 +0.4 534,017 + Atu3484 0.87 +0.6 534,017 - Atu3484 0.87 -0.0 534,492 + Atu3485 0.12 +0.1 534,551 + Atu3485 0.15 -1.2 534,675 + Atu3485 0.21 +0.7 534,684 - Atu3485 0.22 -0.4 534,847 - Atu3485 0.29 +0.3 534,907 + Atu3485 0.32 -2.0 534,958 + Atu3485 0.35 -0.6
Or see this region's nucleotide sequence