Strain Fitness in Agrobacterium fabrum C58 around Atu3423

Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3421 and Atu3423 are separated by 302 nucleotidesAtu3423 and Atu3424 are separated by 27 nucleotides Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325 Atu3421 Atu3423: Atu3423 - hypothetical protein, at 470,628 to 471,077 Atu3423 Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049 Atu3424 Position (kb) 470 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 469.782 kb on + strand, within Atu3421at 469.870 kb on + strand, within Atu3421at 470.076 kb on - strand, within Atu3421at 470.109 kb on - strand, within Atu3421at 470.126 kb on + strand, within Atu3421at 470.303 kb on - strandat 470.448 kb on + strandat 470.448 kb on + strandat 470.612 kb on + strandat 470.965 kb on - strand, within Atu3423at 471.013 kb on - strand, within Atu3423at 471.038 kb on + strandat 471.051 kb on - strandat 471.056 kb on - strandat 471.177 kb on - strandat 471.254 kb on - strand, within Atu3424at 471.254 kb on - strand, within Atu3424at 471.285 kb on - strand, within Atu3424at 471.289 kb on + strand, within Atu3424at 471.358 kb on - strand, within Atu3424at 471.470 kb on - strand, within Atu3424at 471.550 kb on - strand, within Atu3424at 471.623 kb on + strand, within Atu3424at 471.626 kb on - strand, within Atu3424at 471.631 kb on - strand, within Atu3424at 471.631 kb on - strand, within Atu3424at 471.701 kb on + strand, within Atu3424at 471.721 kb on + strand, within Atu3424at 471.726 kb on + strand, within Atu3424at 471.729 kb on - strand, within Atu3424at 471.815 kb on - strand, within Atu3424at 471.842 kb on + strand, within Atu3424at 471.864 kb on + strand, within Atu3424at 471.867 kb on - strand, within Atu3424

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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469,782 + Atu3421 0.46 +1.7
469,870 + Atu3421 0.54 -0.7
470,076 - Atu3421 0.75 -0.7
470,109 - Atu3421 0.78 -0.6
470,126 + Atu3421 0.80 -0.6
470,303 - +0.2
470,448 + +0.8
470,448 + +3.5
470,612 + +0.5
470,965 - Atu3423 0.75 +1.4
471,013 - Atu3423 0.86 -2.0
471,038 + -1.8
471,051 - +1.0
471,056 - +0.6
471,177 - +1.2
471,254 - Atu3424 0.16 +3.6
471,254 - Atu3424 0.16 +2.6
471,285 - Atu3424 0.19 -2.9
471,289 + Atu3424 0.19 -1.0
471,358 - Atu3424 0.27 +1.3
471,470 - Atu3424 0.39 -2.1
471,550 - Atu3424 0.47 +0.3
471,623 + Atu3424 0.55 -1.2
471,626 - Atu3424 0.55 -0.5
471,631 - Atu3424 0.56 -0.1
471,631 - Atu3424 0.56 +1.1
471,701 + Atu3424 0.63 -0.2
471,721 + Atu3424 0.65 +1.0
471,726 + Atu3424 0.66 +0.0
471,729 - Atu3424 0.66 -0.8
471,815 - Atu3424 0.75 +0.7
471,842 + Atu3424 0.78 +1.1
471,864 + Atu3424 0.80 -3.0
471,867 - Atu3424 0.81 +0.9

Or see this region's nucleotide sequence