Strain Fitness in Agrobacterium fabrum C58 around Atu3417

Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3416 and Atu3417 are separated by 25 nucleotidesAtu3417 and Atu3418 are separated by 13 nucleotidesAtu3418 and Atu3419 are separated by 23 nucleotides Atu3416: Atu3416 - ABC transporter substrate binding protein, at 463,331 to 464,269 Atu3416 Atu3417: Atu3417 - ABC transporter permease, at 464,295 to 466,106 Atu3417 Atu3418: Atu3418 - acetyltransferase, at 466,120 to 466,665 Atu3418 Atu3419: Atu3419 - hippurate hydrolase, at 466,689 to 467,876 Atu3419 Position (kb) 464 465 466 467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 463.308 kb on + strandat 463.372 kb on - strandat 463.372 kb on - strandat 463.378 kb on + strandat 463.378 kb on - strandat 463.438 kb on - strand, within Atu3416at 463.444 kb on + strand, within Atu3416at 463.465 kb on - strand, within Atu3416at 463.553 kb on - strand, within Atu3416at 463.691 kb on - strand, within Atu3416at 463.725 kb on - strand, within Atu3416at 463.783 kb on + strand, within Atu3416at 463.796 kb on + strand, within Atu3416at 463.894 kb on - strand, within Atu3416at 463.940 kb on + strand, within Atu3416at 463.949 kb on - strand, within Atu3416at 464.078 kb on - strand, within Atu3416at 464.181 kb on - strandat 464.341 kb on - strandat 464.351 kb on - strandat 464.351 kb on - strandat 464.390 kb on - strandat 464.476 kb on + strandat 464.485 kb on + strand, within Atu3417at 464.507 kb on + strand, within Atu3417at 464.507 kb on + strand, within Atu3417at 464.507 kb on + strand, within Atu3417at 464.507 kb on + strand, within Atu3417at 464.515 kb on - strand, within Atu3417at 464.515 kb on - strand, within Atu3417at 464.515 kb on - strand, within Atu3417at 464.589 kb on + strand, within Atu3417at 464.624 kb on - strand, within Atu3417at 464.846 kb on - strand, within Atu3417at 464.911 kb on - strand, within Atu3417at 464.935 kb on + strand, within Atu3417at 464.984 kb on + strand, within Atu3417at 464.992 kb on - strand, within Atu3417at 464.992 kb on - strand, within Atu3417at 464.992 kb on - strand, within Atu3417at 465.149 kb on + strand, within Atu3417at 465.190 kb on + strand, within Atu3417at 465.285 kb on + strand, within Atu3417at 465.310 kb on - strand, within Atu3417at 465.324 kb on + strand, within Atu3417at 465.324 kb on + strand, within Atu3417at 465.342 kb on - strand, within Atu3417at 465.342 kb on - strand, within Atu3417at 465.360 kb on + strand, within Atu3417at 465.371 kb on + strand, within Atu3417at 465.387 kb on - strand, within Atu3417at 465.414 kb on + strand, within Atu3417at 465.499 kb on + strand, within Atu3417at 465.501 kb on - strand, within Atu3417at 465.507 kb on - strand, within Atu3417at 465.521 kb on + strand, within Atu3417at 465.598 kb on + strand, within Atu3417at 465.598 kb on + strand, within Atu3417at 465.797 kb on - strand, within Atu3417at 465.804 kb on - strand, within Atu3417at 465.821 kb on - strand, within Atu3417at 465.837 kb on + strand, within Atu3417at 465.845 kb on - strand, within Atu3417at 465.845 kb on - strand, within Atu3417at 465.885 kb on - strand, within Atu3417at 466.027 kb on + strandat 466.181 kb on + strand, within Atu3418at 466.206 kb on + strand, within Atu3418at 466.221 kb on + strand, within Atu3418at 466.269 kb on + strand, within Atu3418at 466.269 kb on + strand, within Atu3418at 466.322 kb on + strand, within Atu3418at 466.329 kb on - strand, within Atu3418at 466.329 kb on - strand, within Atu3418at 466.329 kb on - strand, within Atu3418at 466.403 kb on + strand, within Atu3418at 466.411 kb on - strand, within Atu3418at 466.411 kb on - strand, within Atu3418at 466.412 kb on + strand, within Atu3418at 466.412 kb on + strand, within Atu3418at 466.454 kb on + strand, within Atu3418at 466.539 kb on + strand, within Atu3418at 466.597 kb on + strand, within Atu3418at 466.771 kb on - strandat 466.798 kb on + strandat 467.007 kb on - strand, within Atu3419at 467.019 kb on - strand, within Atu3419

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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463,308 + -0.7
463,372 - -1.7
463,372 - -1.2
463,378 + +0.1
463,378 - +1.8
463,438 - Atu3416 0.11 +3.3
463,444 + Atu3416 0.12 +4.2
463,465 - Atu3416 0.14 -3.3
463,553 - Atu3416 0.24 +3.3
463,691 - Atu3416 0.38 +0.6
463,725 - Atu3416 0.42 -2.1
463,783 + Atu3416 0.48 +2.3
463,796 + Atu3416 0.50 -0.7
463,894 - Atu3416 0.60 -0.3
463,940 + Atu3416 0.65 +0.5
463,949 - Atu3416 0.66 -3.0
464,078 - Atu3416 0.80 -0.5
464,181 - -1.4
464,341 - -3.7
464,351 - +0.1
464,351 - -2.2
464,390 - -1.0
464,476 + -0.0
464,485 + Atu3417 0.10 +1.2
464,507 + Atu3417 0.12 +1.8
464,507 + Atu3417 0.12 +1.1
464,507 + Atu3417 0.12 -0.8
464,507 + Atu3417 0.12 +0.4
464,515 - Atu3417 0.12 +0.8
464,515 - Atu3417 0.12 -1.1
464,515 - Atu3417 0.12 -0.6
464,589 + Atu3417 0.16 +0.4
464,624 - Atu3417 0.18 -2.8
464,846 - Atu3417 0.30 +2.1
464,911 - Atu3417 0.34 +0.4
464,935 + Atu3417 0.35 -0.9
464,984 + Atu3417 0.38 -0.8
464,992 - Atu3417 0.38 +0.2
464,992 - Atu3417 0.38 -0.5
464,992 - Atu3417 0.38 +1.3
465,149 + Atu3417 0.47 +0.7
465,190 + Atu3417 0.49 +0.3
465,285 + Atu3417 0.55 -1.5
465,310 - Atu3417 0.56 +1.1
465,324 + Atu3417 0.57 -0.4
465,324 + Atu3417 0.57 -2.0
465,342 - Atu3417 0.58 -0.3
465,342 - Atu3417 0.58 -1.2
465,360 + Atu3417 0.59 -1.5
465,371 + Atu3417 0.59 +0.0
465,387 - Atu3417 0.60 -0.6
465,414 + Atu3417 0.62 +1.1
465,499 + Atu3417 0.66 -2.9
465,501 - Atu3417 0.67 +1.3
465,507 - Atu3417 0.67 +0.3
465,521 + Atu3417 0.68 -0.2
465,598 + Atu3417 0.72 +0.7
465,598 + Atu3417 0.72 +1.8
465,797 - Atu3417 0.83 -1.0
465,804 - Atu3417 0.83 +1.1
465,821 - Atu3417 0.84 -0.9
465,837 + Atu3417 0.85 -0.2
465,845 - Atu3417 0.86 +0.3
465,845 - Atu3417 0.86 +1.9
465,885 - Atu3417 0.88 -0.2
466,027 + -2.5
466,181 + Atu3418 0.11 -0.0
466,206 + Atu3418 0.16 -1.1
466,221 + Atu3418 0.18 +0.6
466,269 + Atu3418 0.27 +0.1
466,269 + Atu3418 0.27 -1.5
466,322 + Atu3418 0.37 +0.1
466,329 - Atu3418 0.38 -1.3
466,329 - Atu3418 0.38 -1.3
466,329 - Atu3418 0.38 +0.2
466,403 + Atu3418 0.52 -1.6
466,411 - Atu3418 0.53 -0.3
466,411 - Atu3418 0.53 -1.0
466,412 + Atu3418 0.53 +0.9
466,412 + Atu3418 0.53 -1.0
466,454 + Atu3418 0.61 +0.3
466,539 + Atu3418 0.77 +3.0
466,597 + Atu3418 0.87 -0.6
466,771 - +1.4
466,798 + +2.4
467,007 - Atu3419 0.27 +1.1
467,019 - Atu3419 0.28 +1.9

Or see this region's nucleotide sequence