Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3412 and Atu3413 are separated by 186 nucleotides Atu3413 and Atu3414 are separated by 230 nucleotides
Atu3412: Atu3412 - ABC transporter permease, at 458,291 to 459,946
Atu3412
Atu3413: Atu3413 - AsnC family transcriptional regulator, at 460,133 to 460,609
Atu3413
Atu3414: Atu3414 - AgaE protein, at 460,840 to 462,165
Atu3414
Position (kb) 460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 459.147 kb on - strand, within Atu3412 at 459.224 kb on - strand, within Atu3412 at 459.319 kb on - strand, within Atu3412 at 459.493 kb on + strand, within Atu3412 at 459.537 kb on + strand, within Atu3412 at 459.573 kb on + strand, within Atu3412 at 459.581 kb on - strand, within Atu3412 at 459.581 kb on - strand, within Atu3412 at 459.707 kb on + strand, within Atu3412 at 459.715 kb on - strand, within Atu3412 at 459.784 kb on - strand at 459.922 kb on + strand at 459.930 kb on - strand at 459.991 kb on + strand at 459.999 kb on - strand at 460.289 kb on - strand, within Atu3413 at 460.431 kb on - strand, within Atu3413 at 460.484 kb on - strand, within Atu3413 at 460.519 kb on - strand, within Atu3413 at 460.537 kb on + strand, within Atu3413 at 460.734 kb on - strand at 460.741 kb on - strand at 460.763 kb on - strand at 460.772 kb on + strand at 460.831 kb on - strand at 460.844 kb on - strand at 460.984 kb on + strand, within Atu3414 at 460.994 kb on + strand, within Atu3414 at 461.002 kb on - strand, within Atu3414 at 461.068 kb on + strand, within Atu3414 at 461.075 kb on + strand, within Atu3414 at 461.083 kb on - strand, within Atu3414 at 461.083 kb on - strand, within Atu3414 at 461.101 kb on + strand, within Atu3414 at 461.230 kb on - strand, within Atu3414 at 461.252 kb on - strand, within Atu3414 at 461.322 kb on + strand, within Atu3414 at 461.322 kb on + strand, within Atu3414 at 461.330 kb on - strand, within Atu3414 at 461.330 kb on - strand, within Atu3414 at 461.352 kb on - strand, within Atu3414 at 461.362 kb on - strand, within Atu3414 at 461.385 kb on - strand, within Atu3414 at 461.421 kb on + strand, within Atu3414 at 461.465 kb on + strand, within Atu3414
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 459,147 - Atu3412 0.52 -2.3 459,224 - Atu3412 0.56 -0.2 459,319 - Atu3412 0.62 +0.1 459,493 + Atu3412 0.73 -2.5 459,537 + Atu3412 0.75 +0.1 459,573 + Atu3412 0.77 -0.8 459,581 - Atu3412 0.78 -2.0 459,581 - Atu3412 0.78 -0.0 459,707 + Atu3412 0.86 -0.9 459,715 - Atu3412 0.86 +0.4 459,784 - -0.8 459,922 + +0.3 459,930 - +2.8 459,991 + -1.0 459,999 - +0.8 460,289 - Atu3413 0.33 -2.3 460,431 - Atu3413 0.62 +0.5 460,484 - Atu3413 0.74 -0.8 460,519 - Atu3413 0.81 +0.7 460,537 + Atu3413 0.85 -1.0 460,734 - +0.5 460,741 - +0.3 460,763 - +0.7 460,772 + -1.0 460,831 - -1.6 460,844 - +1.7 460,984 + Atu3414 0.11 -0.9 460,994 + Atu3414 0.12 -2.2 461,002 - Atu3414 0.12 +0.1 461,068 + Atu3414 0.17 -0.7 461,075 + Atu3414 0.18 -0.6 461,083 - Atu3414 0.18 +0.4 461,083 - Atu3414 0.18 +0.8 461,101 + Atu3414 0.20 +1.7 461,230 - Atu3414 0.29 +0.3 461,252 - Atu3414 0.31 -3.1 461,322 + Atu3414 0.36 -0.1 461,322 + Atu3414 0.36 +0.8 461,330 - Atu3414 0.37 -1.6 461,330 - Atu3414 0.37 -0.2 461,352 - Atu3414 0.39 -0.5 461,362 - Atu3414 0.39 -0.6 461,385 - Atu3414 0.41 -2.9 461,421 + Atu3414 0.44 -0.5 461,465 + Atu3414 0.47 -1.0
Or see this region's nucleotide sequence