Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3143 and Atu3144 are separated by 89 nucleotides Atu3144 and Atu3145 are separated by 50 nucleotides Atu3145 and Atu3146 are separated by 22 nucleotides
Atu3143: Atu3143 - hypothetical protein, at 150,872 to 151,669
Atu3143
Atu3144: Atu3144 - GntR family transcriptional regulator, at 151,759 to 152,496
Atu3144
Atu3145: Atu3145 - pectin degradation protein, at 152,547 to 152,864
Atu3145
Atu3146: Atu3146 - proline dipeptidase, at 152,887 to 154,119
Atu3146
Position (kb) 152
153 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 151.554 kb on - strand, within Atu3143 at 151.570 kb on + strand, within Atu3143 at 151.621 kb on + strand at 151.756 kb on - strand at 151.775 kb on + strand at 151.789 kb on + strand at 151.797 kb on + strand at 151.800 kb on - strand at 151.805 kb on - strand at 151.950 kb on + strand, within Atu3144 at 151.965 kb on + strand, within Atu3144 at 152.044 kb on - strand, within Atu3144 at 152.207 kb on - strand, within Atu3144 at 152.404 kb on - strand, within Atu3144 at 152.422 kb on + strand, within Atu3144 at 152.445 kb on + strand at 152.476 kb on + strand at 152.523 kb on + strand at 152.639 kb on - strand, within Atu3145 at 152.672 kb on - strand, within Atu3145 at 152.691 kb on - strand, within Atu3145 at 152.743 kb on + strand, within Atu3145 at 152.769 kb on - strand, within Atu3145 at 152.806 kb on + strand, within Atu3145 at 152.814 kb on - strand, within Atu3145 at 152.814 kb on - strand, within Atu3145 at 152.820 kb on + strand, within Atu3145 at 152.824 kb on - strand, within Atu3145 at 152.982 kb on + strand at 153.083 kb on - strand, within Atu3146 at 153.119 kb on + strand, within Atu3146 at 153.119 kb on + strand, within Atu3146 at 153.235 kb on - strand, within Atu3146 at 153.236 kb on + strand, within Atu3146 at 153.273 kb on - strand, within Atu3146 at 153.332 kb on + strand, within Atu3146 at 153.332 kb on + strand, within Atu3146 at 153.332 kb on + strand, within Atu3146 at 153.360 kb on - strand, within Atu3146 at 153.629 kb on - strand, within Atu3146 at 153.765 kb on - strand, within Atu3146 at 153.824 kb on + strand, within Atu3146
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 151,554 - Atu3143 0.85 -2.6 151,570 + Atu3143 0.87 -2.2 151,621 + -1.2 151,756 - +0.3 151,775 + -1.6 151,789 + +2.2 151,797 + +0.4 151,800 - -0.8 151,805 - -2.3 151,950 + Atu3144 0.26 +0.9 151,965 + Atu3144 0.28 +2.3 152,044 - Atu3144 0.39 +1.1 152,207 - Atu3144 0.61 -0.6 152,404 - Atu3144 0.87 -0.5 152,422 + Atu3144 0.90 -0.5 152,445 + +0.0 152,476 + -0.9 152,523 + -0.4 152,639 - Atu3145 0.29 -2.0 152,672 - Atu3145 0.39 -0.9 152,691 - Atu3145 0.45 +1.3 152,743 + Atu3145 0.62 +1.0 152,769 - Atu3145 0.70 -0.0 152,806 + Atu3145 0.81 +0.9 152,814 - Atu3145 0.84 -0.3 152,814 - Atu3145 0.84 -0.3 152,820 + Atu3145 0.86 +1.2 152,824 - Atu3145 0.87 +3.4 152,982 + +0.4 153,083 - Atu3146 0.16 -0.3 153,119 + Atu3146 0.19 -0.3 153,119 + Atu3146 0.19 +2.4 153,235 - Atu3146 0.28 -3.1 153,236 + Atu3146 0.28 -1.8 153,273 - Atu3146 0.31 +1.3 153,332 + Atu3146 0.36 +1.6 153,332 + Atu3146 0.36 -3.8 153,332 + Atu3146 0.36 -2.7 153,360 - Atu3146 0.38 +0.1 153,629 - Atu3146 0.60 -0.3 153,765 - Atu3146 0.71 +1.5 153,824 + Atu3146 0.76 -0.7
Or see this region's nucleotide sequence