Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3081 and Atu8183 are separated by 76 nucleotides Atu8183 and Atu3083 overlap by 4 nucleotides Atu3083 and Atu3084 overlap by 4 nucleotides Atu3084 and Atu3085 are separated by 151 nucleotides
Atu3081: Atu3081 - hypothetical protein, at 87,692 to 89,185
Atu3081
Atu8183: Atu8183 - hypothetical protein, at 89,262 to 89,711
Atu8183
Atu3083: Atu3083 - hypothetical protein, at 89,708 to 90,148
Atu3083
Atu3084: Atu3084 - RNA polymerase sigma factor, at 90,145 to 90,687
Atu3084
Atu3085: Atu3085 - hydantoin racemase, at 90,839 to 91,582
Atu3085
Position (kb) 89
90
91 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 88.709 kb on - strand, within Atu3081 at 88.844 kb on + strand, within Atu3081 at 88.845 kb on + strand, within Atu3081 at 88.883 kb on - strand, within Atu3081 at 88.893 kb on - strand, within Atu3081 at 88.900 kb on - strand, within Atu3081 at 88.916 kb on - strand, within Atu3081 at 88.959 kb on + strand, within Atu3081 at 88.973 kb on + strand, within Atu3081 at 89.051 kb on + strand at 89.139 kb on - strand at 89.255 kb on + strand at 89.303 kb on - strand at 89.413 kb on + strand, within Atu8183 at 89.413 kb on - strand, within Atu8183 at 89.431 kb on - strand, within Atu8183 at 89.436 kb on - strand, within Atu8183 at 89.554 kb on + strand, within Atu8183 at 89.562 kb on - strand, within Atu8183 at 89.575 kb on - strand, within Atu8183 at 89.611 kb on - strand, within Atu8183 at 89.683 kb on - strand at 89.731 kb on + strand at 89.758 kb on + strand, within Atu3083 at 89.825 kb on - strand, within Atu3083 at 89.830 kb on - strand, within Atu3083 at 89.955 kb on - strand, within Atu3083 at 90.030 kb on + strand, within Atu3083 at 90.038 kb on - strand, within Atu3083 at 90.058 kb on + strand, within Atu3083 at 90.063 kb on + strand, within Atu3083 at 90.195 kb on + strand at 90.208 kb on - strand, within Atu3084 at 90.218 kb on + strand, within Atu3084 at 90.311 kb on - strand, within Atu3084 at 90.311 kb on - strand, within Atu3084 at 90.343 kb on + strand, within Atu3084 at 90.440 kb on + strand, within Atu3084 at 90.450 kb on + strand, within Atu3084 at 90.492 kb on + strand, within Atu3084 at 90.492 kb on + strand, within Atu3084 at 90.719 kb on - strand at 90.867 kb on + strand at 90.882 kb on + strand at 90.890 kb on - strand at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 91.020 kb on + strand, within Atu3085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 88,709 - Atu3081 0.68 -1.3 88,844 + Atu3081 0.77 -0.2 88,845 + Atu3081 0.77 +0.6 88,883 - Atu3081 0.80 -0.6 88,893 - Atu3081 0.80 +1.8 88,900 - Atu3081 0.81 -1.0 88,916 - Atu3081 0.82 -1.0 88,959 + Atu3081 0.85 -1.6 88,973 + Atu3081 0.86 +1.3 89,051 + -0.1 89,139 - +0.7 89,255 + +2.0 89,303 - -1.7 89,413 + Atu8183 0.34 -3.8 89,413 - Atu8183 0.34 -1.2 89,431 - Atu8183 0.38 -1.1 89,436 - Atu8183 0.39 -2.9 89,554 + Atu8183 0.65 +1.0 89,562 - Atu8183 0.67 -0.2 89,575 - Atu8183 0.70 -0.9 89,611 - Atu8183 0.78 -2.3 89,683 - -1.0 89,731 + -0.0 89,758 + Atu3083 0.11 -2.6 89,825 - Atu3083 0.27 +0.6 89,830 - Atu3083 0.28 -0.7 89,955 - Atu3083 0.56 -0.0 90,030 + Atu3083 0.73 -1.4 90,038 - Atu3083 0.75 -1.5 90,058 + Atu3083 0.79 -3.8 90,063 + Atu3083 0.80 -1.0 90,195 + +0.1 90,208 - Atu3084 0.12 -0.1 90,218 + Atu3084 0.13 -0.3 90,311 - Atu3084 0.31 +1.1 90,311 - Atu3084 0.31 +0.7 90,343 + Atu3084 0.36 +1.0 90,440 + Atu3084 0.54 +0.3 90,450 + Atu3084 0.56 +0.2 90,492 + Atu3084 0.64 -3.9 90,492 + Atu3084 0.64 -0.2 90,719 - -4.0 90,867 + +0.2 90,882 + +0.3 90,890 - +1.5 90,961 + Atu3085 0.16 -1.8 90,961 + Atu3085 0.16 -2.1 90,961 + Atu3085 0.16 -0.0 90,961 + Atu3085 0.16 +1.3 90,969 - Atu3085 0.17 +2.8 90,969 - Atu3085 0.17 -2.3 91,020 + Atu3085 0.24 +1.8
Or see this region's nucleotide sequence