Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0384 and Atu0385 overlap by 1 nucleotides Atu0385 and Atu8066 are separated by 36 nucleotides Atu8066 and Atu0386 are separated by 41 nucleotides Atu0386 and Atu0387 are separated by 37 nucleotides Atu0387 and Atu0388 are separated by 194 nucleotides
Atu0384: Atu0384 - preprotein translocase 60 kD membrane subunit, at 376,063 to 377,862
Atu0384
Atu0385: Atu0385 - ribonuclease P protein component, at 377,862 to 378,245
Atu0385
Atu8066: Atu8066 - 50S ribosomal protein L34, at 378,282 to 378,419
Atu8066
Atu0386: Atu0386 - hypothetical protein, at 378,461 to 378,733
Atu0386
Atu0387: Atu0387 - methyl-accepting chemotaxis protein, at 378,771 to 380,819
Atu0387
Atu0388: Atu0388 - two component sensor kinase, at 381,014 to 382,489
Atu0388
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 378.702 kb on - strand, within Atu0386 at 378.814 kb on + strand at 378.824 kb on + strand at 378.832 kb on + strand at 378.840 kb on + strand at 378.842 kb on + strand at 378.913 kb on - strand at 378.921 kb on + strand at 378.957 kb on - strand at 378.966 kb on + strand at 379.033 kb on - strand, within Atu0387 at 379.054 kb on + strand, within Atu0387 at 379.077 kb on + strand, within Atu0387 at 379.111 kb on + strand, within Atu0387 at 379.119 kb on - strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.195 kb on + strand, within Atu0387 at 379.213 kb on - strand, within Atu0387 at 379.217 kb on + strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.280 kb on + strand, within Atu0387 at 379.289 kb on - strand, within Atu0387 at 379.345 kb on + strand, within Atu0387 at 379.379 kb on + strand, within Atu0387 at 379.399 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.479 kb on - strand, within Atu0387 at 379.549 kb on + strand, within Atu0387 at 379.562 kb on + strand, within Atu0387 at 379.570 kb on - strand, within Atu0387 at 379.593 kb on + strand, within Atu0387 at 379.669 kb on - strand, within Atu0387 at 379.681 kb on - strand, within Atu0387 at 379.705 kb on + strand, within Atu0387 at 379.732 kb on - strand, within Atu0387 at 379.761 kb on + strand, within Atu0387 at 379.941 kb on - strand, within Atu0387 at 379.956 kb on + strand, within Atu0387 at 379.964 kb on - strand, within Atu0387 at 379.977 kb on + strand, within Atu0387 at 379.982 kb on - strand, within Atu0387 at 380.097 kb on + strand, within Atu0387 at 380.277 kb on - strand, within Atu0387 at 380.362 kb on + strand, within Atu0387 at 380.471 kb on - strand, within Atu0387 at 380.484 kb on - strand, within Atu0387 at 380.515 kb on + strand, within Atu0387 at 380.552 kb on - strand, within Atu0387 at 380.599 kb on - strand, within Atu0387 at 380.658 kb on - strand at 380.752 kb on + strand at 380.780 kb on - strand at 380.787 kb on + strand at 380.806 kb on - strand at 380.820 kb on - strand at 380.854 kb on - strand at 380.943 kb on + strand at 380.999 kb on + strand at 381.001 kb on + strand at 381.029 kb on + strand at 381.034 kb on - strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.077 kb on + strand at 381.180 kb on + strand, within Atu0388 at 381.197 kb on + strand, within Atu0388 at 381.310 kb on + strand, within Atu0388 at 381.310 kb on + strand, within Atu0388 at 381.434 kb on - strand, within Atu0388 at 381.470 kb on + strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.593 kb on - strand, within Atu0388 at 381.736 kb on - strand, within Atu0388 at 381.769 kb on - strand, within Atu0388
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 378,702 - Atu0386 0.88 +1.3 378,814 + -0.6 378,824 + -1.0 378,832 + +1.9 378,840 + +2.0 378,842 + -3.4 378,913 - -1.1 378,921 + +0.9 378,957 - -2.6 378,966 + +0.1 379,033 - Atu0387 0.13 -2.4 379,054 + Atu0387 0.14 +0.8 379,077 + Atu0387 0.15 -1.6 379,111 + Atu0387 0.17 +0.9 379,119 - Atu0387 0.17 -0.9 379,121 + Atu0387 0.17 -1.9 379,121 + Atu0387 0.17 -0.8 379,121 + Atu0387 0.17 -0.7 379,121 + Atu0387 0.17 -0.6 379,121 + Atu0387 0.17 -0.5 379,121 + Atu0387 0.17 +1.9 379,121 + Atu0387 0.17 -0.5 379,129 - Atu0387 0.17 -2.0 379,129 - Atu0387 0.17 -0.4 379,136 + Atu0387 0.18 +1.3 379,136 + Atu0387 0.18 -1.2 379,190 + Atu0387 0.20 +0.1 379,190 + Atu0387 0.20 +1.6 379,195 + Atu0387 0.21 +1.8 379,213 - Atu0387 0.22 +0.6 379,217 + Atu0387 0.22 +0.6 379,225 - Atu0387 0.22 -0.9 379,225 - Atu0387 0.22 -0.6 379,280 + Atu0387 0.25 -1.9 379,289 - Atu0387 0.25 +2.5 379,345 + Atu0387 0.28 -3.1 379,379 + Atu0387 0.30 +1.2 379,399 - Atu0387 0.31 -3.8 379,469 - Atu0387 0.34 -0.1 379,469 - Atu0387 0.34 -0.0 379,479 - Atu0387 0.35 +1.4 379,549 + Atu0387 0.38 -1.2 379,562 + Atu0387 0.39 +2.1 379,570 - Atu0387 0.39 +0.9 379,593 + Atu0387 0.40 -1.6 379,669 - Atu0387 0.44 -0.2 379,681 - Atu0387 0.44 -0.9 379,705 + Atu0387 0.46 -0.1 379,732 - Atu0387 0.47 -1.0 379,761 + Atu0387 0.48 -0.6 379,941 - Atu0387 0.57 +0.1 379,956 + Atu0387 0.58 -1.8 379,964 - Atu0387 0.58 +0.2 379,977 + Atu0387 0.59 -0.6 379,982 - Atu0387 0.59 -1.5 380,097 + Atu0387 0.65 +3.5 380,277 - Atu0387 0.73 +0.9 380,362 + Atu0387 0.78 -0.4 380,471 - Atu0387 0.83 +0.2 380,484 - Atu0387 0.84 -0.3 380,515 + Atu0387 0.85 -0.3 380,552 - Atu0387 0.87 +1.4 380,599 - Atu0387 0.89 -1.3 380,658 - +0.1 380,752 + -0.3 380,780 - -1.5 380,787 + +0.0 380,806 - -1.2 380,820 - -1.5 380,854 - +0.4 380,943 + +3.3 380,999 + -2.1 381,001 + +0.1 381,029 + +0.3 381,034 - +2.0 381,036 + -0.1 381,036 + -0.7 381,077 + -0.6 381,180 + Atu0388 0.11 -1.2 381,197 + Atu0388 0.12 +0.3 381,310 + Atu0388 0.20 +0.5 381,310 + Atu0388 0.20 -1.7 381,434 - Atu0388 0.28 +0.3 381,470 + Atu0388 0.31 +0.8 381,503 - Atu0388 0.33 -2.3 381,503 - Atu0388 0.33 -0.8 381,503 - Atu0388 0.33 -3.2 381,593 - Atu0388 0.39 +1.0 381,736 - Atu0388 0.49 +1.3 381,769 - Atu0388 0.51 -1.3
Or see this region's nucleotide sequence