Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0226 and Atu0227 are separated by 186 nucleotides Atu0227 and Atu0228 are separated by 119 nucleotides Atu0228 and Atu0229 are separated by 137 nucleotides Atu0229 and Atu0230 are separated by 3 nucleotides Atu0230 and Atu0231 overlap by 2 nucleotides Atu0231 and Atu0232 are separated by 87 nucleotides
Atu0226: Atu0226 - PilQ, at 230,262 to 230,645
Atu0226
Atu0227: Atu0227 - tRNA-Leu, at 230,832 to 230,918
Atu0227
Atu0228: Atu0228 - hypothetical protein, at 231,038 to 231,343
Atu0228
Atu0229: Atu0229 - hypothetical protein, at 231,481 to 231,930
Atu0229
Atu0230: Atu0230 - hypothetical protein, at 231,934 to 232,092
Atu0230
Atu0231: Atu0231 - GMP synthase, at 232,091 to 232,765
Atu0231
Atu0232: Atu0232 - hypothetical protein, at 232,853 to 233,041
Atu0232
Position (kb) 231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.547 kb on - strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.578 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.590 kb on - strand, within Atu0226 at 230.592 kb on - strand, within Atu0226 at 230.639 kb on + strand at 231.052 kb on - strand at 231.066 kb on - strand at 231.160 kb on - strand, within Atu0228 at 231.273 kb on - strand, within Atu0228 at 231.309 kb on - strand, within Atu0228 at 231.336 kb on - strand at 231.424 kb on - strand at 231.424 kb on - strand at 231.424 kb on - strand at 231.556 kb on - strand, within Atu0229 at 231.649 kb on + strand, within Atu0229 at 231.664 kb on - strand, within Atu0229 at 231.669 kb on - strand, within Atu0229 at 231.677 kb on - strand, within Atu0229 at 231.686 kb on - strand, within Atu0229 at 231.691 kb on - strand, within Atu0229 at 231.731 kb on + strand, within Atu0229 at 231.739 kb on - strand, within Atu0229 at 231.766 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.828 kb on - strand, within Atu0229 at 231.899 kb on - strand at 231.940 kb on - strand at 232.010 kb on - strand, within Atu0230 at 232.124 kb on + strand at 232.165 kb on - strand, within Atu0231 at 232.252 kb on + strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.293 kb on - strand, within Atu0231 at 232.306 kb on + strand, within Atu0231 at 232.331 kb on - strand, within Atu0231 at 232.334 kb on + strand, within Atu0231 at 232.401 kb on + strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.541 kb on + strand, within Atu0231 at 232.727 kb on + strand at 232.744 kb on + strand at 232.884 kb on - strand, within Atu0232 at 232.902 kb on + strand, within Atu0232
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 230,537 + Atu0226 0.72 -0.6 230,537 + Atu0226 0.72 -0.5 230,537 + Atu0226 0.72 +1.2 230,537 + Atu0226 0.72 +1.1 230,545 - Atu0226 0.74 -0.7 230,545 - Atu0226 0.74 +1.1 230,545 - Atu0226 0.74 -0.4 230,545 - Atu0226 0.74 -0.8 230,547 - Atu0226 0.74 -4.7 230,577 + Atu0226 0.82 +1.6 230,577 + Atu0226 0.82 +1.8 230,577 + Atu0226 0.82 -2.1 230,577 + Atu0226 0.82 -0.4 230,578 - Atu0226 0.82 +1.5 230,585 - Atu0226 0.84 -0.3 230,585 - Atu0226 0.84 -4.4 230,585 - Atu0226 0.84 -0.1 230,585 - Atu0226 0.84 -0.6 230,590 - Atu0226 0.85 -1.0 230,592 - Atu0226 0.86 -0.2 230,639 + +0.4 231,052 - -2.5 231,066 - +1.4 231,160 - Atu0228 0.40 -0.0 231,273 - Atu0228 0.77 +0.6 231,309 - Atu0228 0.89 -0.8 231,336 - -0.4 231,424 - -0.6 231,424 - -0.0 231,424 - +0.9 231,556 - Atu0229 0.17 +0.4 231,649 + Atu0229 0.37 +0.5 231,664 - Atu0229 0.41 -0.4 231,669 - Atu0229 0.42 -3.1 231,677 - Atu0229 0.44 -1.9 231,686 - Atu0229 0.46 -0.7 231,691 - Atu0229 0.47 -4.4 231,731 + Atu0229 0.56 +1.6 231,739 - Atu0229 0.57 -2.7 231,766 + Atu0229 0.63 -0.0 231,820 + Atu0229 0.75 +0.3 231,820 + Atu0229 0.75 +1.0 231,820 + Atu0229 0.75 +4.9 231,828 - Atu0229 0.77 -0.2 231,899 - +0.8 231,940 - -2.8 232,010 - Atu0230 0.48 -0.3 232,124 + -0.9 232,165 - Atu0231 0.11 +0.4 232,252 + Atu0231 0.24 -1.7 232,273 - Atu0231 0.27 -0.9 232,273 - Atu0231 0.27 -0.2 232,293 - Atu0231 0.30 -0.2 232,306 + Atu0231 0.32 -1.1 232,331 - Atu0231 0.36 -3.8 232,334 + Atu0231 0.36 +1.3 232,401 + Atu0231 0.46 +0.6 232,434 - Atu0231 0.51 -0.6 232,434 - Atu0231 0.51 +2.1 232,541 + Atu0231 0.67 -0.2 232,727 + +0.6 232,744 + -1.2 232,884 - Atu0232 0.16 +0.4 232,902 + Atu0232 0.26 +1.0
Or see this region's nucleotide sequence