Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3176 and Atu3177 are separated by 216 nucleotides Atu3177 and Atu3178 are separated by 170 nucleotides Atu3178 and Atu3179 are separated by 28 nucleotides Atu3179 and Atu3180 overlap by 8 nucleotides
Atu3176: Atu3176 - GntR family transcriptional regulator, at 186,432 to 187,148
Atu3176
Atu3177: Atu3177 - ribonuclease H, at 187,365 to 187,838
Atu3177
Atu3178: Atu3178 - ABC transporter substrate binding protein, at 188,009 to 189,022
Atu3178
Atu3179: Atu3179 - ABC transporter permease, at 189,051 to 189,917
Atu3179
Atu3180: Atu3180 - ABC transporter permease, at 189,910 to 190,743
Atu3180
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.052 kb on - strand, within Atu3176 at 187.058 kb on + strand, within Atu3176 at 187.089 kb on - strand at 187.143 kb on + strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.438 kb on + strand, within Atu3177 at 187.439 kb on - strand, within Atu3177 at 187.458 kb on + strand, within Atu3177 at 187.597 kb on + strand, within Atu3177 at 187.634 kb on - strand, within Atu3177 at 187.638 kb on - strand, within Atu3177 at 187.668 kb on - strand, within Atu3177 at 187.796 kb on + strand at 187.826 kb on - strand at 187.970 kb on - strand at 187.989 kb on - strand at 187.989 kb on - strand at 188.000 kb on - strand at 188.059 kb on + strand at 188.067 kb on - strand at 188.120 kb on + strand, within Atu3178 at 188.133 kb on - strand, within Atu3178 at 188.134 kb on - strand, within Atu3178 at 188.139 kb on - strand, within Atu3178 at 188.207 kb on - strand, within Atu3178 at 188.207 kb on - strand, within Atu3178 at 188.216 kb on - strand, within Atu3178 at 188.495 kb on + strand, within Atu3178 at 188.503 kb on - strand, within Atu3178 at 188.691 kb on + strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.777 kb on - strand, within Atu3178 at 188.932 kb on - strand at 188.946 kb on + strand at 188.946 kb on + strand at 188.954 kb on - strand at 189.020 kb on - strand at 189.020 kb on - strand at 189.020 kb on - strand at 189.020 kb on - strand at 189.058 kb on + strand at 189.066 kb on - strand at 189.066 kb on - strand at 189.116 kb on - strand at 189.191 kb on - strand, within Atu3179 at 189.196 kb on - strand, within Atu3179 at 189.240 kb on + strand, within Atu3179 at 189.240 kb on + strand, within Atu3179 at 189.248 kb on - strand, within Atu3179 at 189.259 kb on + strand, within Atu3179 at 189.259 kb on + strand, within Atu3179 at 189.262 kb on - strand, within Atu3179 at 189.267 kb on - strand, within Atu3179 at 189.267 kb on - strand, within Atu3179 at 189.349 kb on - strand, within Atu3179 at 189.398 kb on - strand, within Atu3179 at 189.424 kb on - strand, within Atu3179 at 189.456 kb on - strand, within Atu3179 at 189.484 kb on + strand, within Atu3179 at 189.600 kb on + strand, within Atu3179 at 189.605 kb on + strand, within Atu3179 at 189.684 kb on + strand, within Atu3179 at 189.689 kb on + strand, within Atu3179 at 189.781 kb on - strand, within Atu3179 at 189.887 kb on - strand at 189.913 kb on + strand at 189.961 kb on + strand at 189.961 kb on + strand at 189.978 kb on + strand at 189.981 kb on - strand at 189.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 187,052 - Atu3176 0.86 +0.4 187,058 + Atu3176 0.87 +0.2 187,089 - -1.0 187,143 + -2.0 187,151 - +0.3 187,151 - -0.7 187,151 - -0.0 187,438 + Atu3177 0.15 -0.5 187,439 - Atu3177 0.16 -0.3 187,458 + Atu3177 0.20 -0.5 187,597 + Atu3177 0.49 +0.2 187,634 - Atu3177 0.57 +0.4 187,638 - Atu3177 0.58 -0.7 187,668 - Atu3177 0.64 +0.9 187,796 + -0.2 187,826 - -0.5 187,970 - -1.6 187,989 - +0.4 187,989 - -0.4 188,000 - +0.1 188,059 + -2.0 188,067 - +0.5 188,120 + Atu3178 0.11 -1.2 188,133 - Atu3178 0.12 -1.1 188,134 - Atu3178 0.12 -1.7 188,139 - Atu3178 0.13 -1.6 188,207 - Atu3178 0.20 -0.5 188,207 - Atu3178 0.20 -0.7 188,216 - Atu3178 0.20 +0.1 188,495 + Atu3178 0.48 +0.0 188,503 - Atu3178 0.49 +0.0 188,691 + Atu3178 0.67 -0.3 188,699 - Atu3178 0.68 -1.1 188,699 - Atu3178 0.68 -1.9 188,699 - Atu3178 0.68 -0.1 188,777 - Atu3178 0.76 -1.4 188,932 - -0.6 188,946 + -0.8 188,946 + -0.3 188,954 - -0.5 189,020 - -0.1 189,020 - -0.6 189,020 - -1.1 189,020 - +0.4 189,058 + -0.9 189,066 - -1.4 189,066 - -1.6 189,116 - +0.3 189,191 - Atu3179 0.16 -0.1 189,196 - Atu3179 0.17 -1.1 189,240 + Atu3179 0.22 -0.3 189,240 + Atu3179 0.22 +0.2 189,248 - Atu3179 0.23 -0.1 189,259 + Atu3179 0.24 -0.1 189,259 + Atu3179 0.24 +0.0 189,262 - Atu3179 0.24 +0.6 189,267 - Atu3179 0.25 +1.1 189,267 - Atu3179 0.25 +0.4 189,349 - Atu3179 0.34 -0.3 189,398 - Atu3179 0.40 +0.4 189,424 - Atu3179 0.43 -0.2 189,456 - Atu3179 0.47 -0.7 189,484 + Atu3179 0.50 -0.3 189,600 + Atu3179 0.63 -0.6 189,605 + Atu3179 0.64 -0.4 189,684 + Atu3179 0.73 -1.8 189,689 + Atu3179 0.74 -0.1 189,781 - Atu3179 0.84 -0.8 189,887 - +0.7 189,913 + -0.1 189,961 + -0.8 189,961 + -0.4 189,978 + -0.9 189,981 - -0.5 189,983 + -0.3
Or see this region's nucleotide sequence