Strain Fitness in Agrobacterium fabrum C58 around Atu8148

Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1165 and Atu1166 are separated by 12 nucleotidesAtu1166 and Atu8148 are separated by 2 nucleotidesAtu8148 and Atu1169 overlap by 1 nucleotidesAtu1169 and Atu1170 are separated by 293 nucleotides Atu1165: Atu1165 - serine hydroxymethyltransferase, at 1,160,109 to 1,161,398 Atu1165 Atu1166: Atu1166 - hypothetical protein, at 1,161,411 to 1,161,890 Atu1166 Atu8148: Atu8148 - bifunctional riboflavin deaminase-reductase, at 1,161,893 to 1,163,137 Atu8148 Atu1169: Atu1169 - riboflavin synthase alpha chain, at 1,163,137 to 1,163,748 Atu1169 Atu1170: Atu1170 - RhtB family transporter, at 1,164,042 to 1,164,674 Atu1170 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -1 0 1at 1163.723 kb on + strandat 1163.830 kb on + strandat 1163.855 kb on - strandat 1164.024 kb on + strandat 1164.087 kb on - strandat 1164.119 kb on - strand, within Atu1170

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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1,163,723 + -0.3
1,163,830 + +0.3
1,163,855 - -0.8
1,164,024 + +0.8
1,164,087 - +0.9
1,164,119 - Atu1170 0.12 +0.2

Or see this region's nucleotide sequence