Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3874 and Atu3875 are separated by 13 nucleotides Atu3875 and Atu3876 are separated by 2 nucleotides
Atu3874: Atu3874 - L-xylulose kinase, at 967,837 to 969,315
Atu3874
Atu3875: Atu3875 - aldolase, at 969,329 to 970,171
Atu3875
Atu3876: Atu3876 - glycerol-3-phosphate dehydrogenase, at 970,174 to 971,898
Atu3876
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 968.353 kb on - strand, within Atu3874 at 968.363 kb on - strand, within Atu3874 at 968.478 kb on - strand, within Atu3874 at 968.493 kb on + strand, within Atu3874 at 968.493 kb on + strand, within Atu3874 at 968.506 kb on - strand, within Atu3874 at 968.572 kb on + strand, within Atu3874 at 968.580 kb on + strand, within Atu3874 at 968.677 kb on - strand, within Atu3874 at 968.677 kb on - strand, within Atu3874 at 968.730 kb on + strand, within Atu3874 at 968.737 kb on + strand, within Atu3874 at 968.781 kb on + strand, within Atu3874 at 968.798 kb on + strand, within Atu3874 at 968.863 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.886 kb on - strand, within Atu3874 at 968.900 kb on - strand, within Atu3874 at 968.917 kb on + strand, within Atu3874 at 968.925 kb on - strand, within Atu3874 at 968.942 kb on + strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.979 kb on - strand, within Atu3874 at 969.025 kb on + strand, within Atu3874 at 969.108 kb on - strand, within Atu3874 at 969.108 kb on - strand, within Atu3874 at 969.118 kb on + strand, within Atu3874 at 969.167 kb on - strand, within Atu3874 at 969.198 kb on + strand at 969.211 kb on - strand at 969.218 kb on - strand at 969.266 kb on + strand at 969.289 kb on - strand at 969.311 kb on - strand at 969.336 kb on + strand at 969.344 kb on - strand at 969.427 kb on + strand, within Atu3875 at 969.527 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.553 kb on + strand, within Atu3875 at 969.627 kb on + strand, within Atu3875 at 969.670 kb on + strand, within Atu3875 at 969.687 kb on + strand, within Atu3875 at 969.695 kb on - strand, within Atu3875 at 969.722 kb on - strand, within Atu3875 at 969.822 kb on - strand, within Atu3875 at 969.862 kb on + strand, within Atu3875 at 969.894 kb on + strand, within Atu3875 at 970.001 kb on + strand, within Atu3875 at 970.061 kb on - strand, within Atu3875 at 970.119 kb on - strand at 970.195 kb on + strand at 970.220 kb on - strand at 970.371 kb on + strand, within Atu3876 at 970.511 kb on + strand, within Atu3876 at 970.523 kb on + strand, within Atu3876 at 970.585 kb on + strand, within Atu3876 at 970.663 kb on + strand, within Atu3876 at 970.859 kb on + strand, within Atu3876 at 970.906 kb on - strand, within Atu3876 at 970.927 kb on + strand, within Atu3876 at 970.946 kb on + strand, within Atu3876 at 971.046 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.074 kb on + strand, within Atu3876 at 971.079 kb on + strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.082 kb on - strand, within Atu3876
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 968,353 - Atu3874 0.35 -0.6 968,363 - Atu3874 0.36 +0.5 968,478 - Atu3874 0.43 +1.8 968,493 + Atu3874 0.44 -1.0 968,493 + Atu3874 0.44 -2.4 968,506 - Atu3874 0.45 -1.3 968,572 + Atu3874 0.50 -2.1 968,580 + Atu3874 0.50 +0.6 968,677 - Atu3874 0.57 -1.6 968,677 - Atu3874 0.57 +0.3 968,730 + Atu3874 0.60 -1.6 968,737 + Atu3874 0.61 -1.3 968,781 + Atu3874 0.64 +0.8 968,798 + Atu3874 0.65 +0.8 968,863 + Atu3874 0.69 -2.0 968,873 + Atu3874 0.70 -1.2 968,873 + Atu3874 0.70 +0.9 968,873 + Atu3874 0.70 -0.4 968,873 + Atu3874 0.70 -0.1 968,873 + Atu3874 0.70 +0.5 968,873 + Atu3874 0.70 +0.8 968,873 + Atu3874 0.70 +0.6 968,881 - Atu3874 0.71 +0.9 968,881 - Atu3874 0.71 +1.9 968,881 - Atu3874 0.71 -0.8 968,881 - Atu3874 0.71 -0.7 968,881 - Atu3874 0.71 -1.4 968,881 - Atu3874 0.71 -1.1 968,881 - Atu3874 0.71 -2.2 968,886 - Atu3874 0.71 -1.2 968,900 - Atu3874 0.72 -3.2 968,917 + Atu3874 0.73 +1.3 968,925 - Atu3874 0.74 -0.7 968,942 + Atu3874 0.75 +0.4 968,950 - Atu3874 0.75 -0.0 968,950 - Atu3874 0.75 -1.1 968,950 - Atu3874 0.75 +1.9 968,979 - Atu3874 0.77 -0.9 969,025 + Atu3874 0.80 +0.5 969,108 - Atu3874 0.86 +1.2 969,108 - Atu3874 0.86 +1.5 969,118 + Atu3874 0.87 +0.0 969,167 - Atu3874 0.90 -1.8 969,198 + -0.7 969,211 - +0.2 969,218 - -2.2 969,266 + -0.2 969,289 - +0.6 969,311 - -0.6 969,336 + +2.7 969,344 - -0.8 969,427 + Atu3875 0.12 +0.6 969,527 + Atu3875 0.23 +0.4 969,532 + Atu3875 0.24 -1.1 969,532 + Atu3875 0.24 -1.7 969,553 + Atu3875 0.27 -0.7 969,627 + Atu3875 0.35 -0.8 969,670 + Atu3875 0.40 -3.0 969,687 + Atu3875 0.42 -1.1 969,695 - Atu3875 0.43 +1.3 969,722 - Atu3875 0.47 -0.5 969,822 - Atu3875 0.58 +0.0 969,862 + Atu3875 0.63 -0.2 969,894 + Atu3875 0.67 -0.6 970,001 + Atu3875 0.80 +0.1 970,061 - Atu3875 0.87 -1.8 970,119 - +0.4 970,195 + -2.7 970,220 - +0.6 970,371 + Atu3876 0.11 -0.9 970,511 + Atu3876 0.20 -1.3 970,523 + Atu3876 0.20 -0.0 970,585 + Atu3876 0.24 -1.9 970,663 + Atu3876 0.28 -2.2 970,859 + Atu3876 0.40 -0.9 970,906 - Atu3876 0.42 -2.2 970,927 + Atu3876 0.44 -2.7 970,946 + Atu3876 0.45 +1.1 971,046 + Atu3876 0.51 -0.3 971,048 + Atu3876 0.51 -0.0 971,048 + Atu3876 0.51 -2.8 971,074 + Atu3876 0.52 -2.4 971,079 + Atu3876 0.52 +1.1 971,082 - Atu3876 0.53 -1.6 971,082 - Atu3876 0.53 -0.4
Or see this region's nucleotide sequence