Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3271 and Atu3272 are separated by 476 nucleotides Atu3272 and Atu3273 are separated by 266 nucleotides
Atu3271: Atu3271 - glycosyltransferase, at 290,253 to 291,377
Atu3271
Atu3272: Atu3272 - exopolysaccharide export protein, at 291,854 to 293,050
Atu3272
Atu3273: Atu3273 - HlyD family secretion protein, at 293,317 to 294,594
Atu3273
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 290.943 kb on + strand, within Atu3271 at 291.022 kb on + strand, within Atu3271 at 291.048 kb on + strand, within Atu3271 at 291.127 kb on - strand, within Atu3271 at 291.153 kb on + strand, within Atu3271 at 291.376 kb on + strand at 291.796 kb on + strand at 291.922 kb on + strand at 292.015 kb on + strand, within Atu3272 at 292.122 kb on - strand, within Atu3272 at 292.136 kb on - strand, within Atu3272 at 292.156 kb on + strand, within Atu3272 at 292.315 kb on - strand, within Atu3272 at 292.325 kb on - strand, within Atu3272 at 292.437 kb on - strand, within Atu3272 at 292.526 kb on - strand, within Atu3272 at 292.564 kb on + strand, within Atu3272 at 292.595 kb on - strand, within Atu3272 at 292.627 kb on + strand, within Atu3272 at 292.632 kb on + strand, within Atu3272 at 292.759 kb on + strand, within Atu3272 at 292.759 kb on + strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 293.004 kb on - strand at 293.117 kb on + strand at 293.254 kb on - strand at 293.336 kb on + strand at 293.469 kb on - strand, within Atu3273 at 293.521 kb on + strand, within Atu3273 at 293.529 kb on - strand, within Atu3273 at 293.531 kb on - strand, within Atu3273 at 293.544 kb on + strand, within Atu3273 at 293.608 kb on - strand, within Atu3273 at 293.611 kb on - strand, within Atu3273 at 293.638 kb on + strand, within Atu3273 at 293.645 kb on - strand, within Atu3273 at 293.736 kb on - strand, within Atu3273 at 293.754 kb on + strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.762 kb on - strand, within Atu3273 at 293.780 kb on + strand, within Atu3273 at 293.790 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.921 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.936 kb on + strand, within Atu3273 at 294.002 kb on + strand, within Atu3273
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 290,943 + Atu3271 0.61 -0.2 291,022 + Atu3271 0.68 +0.9 291,048 + Atu3271 0.71 +0.2 291,127 - Atu3271 0.78 -2.1 291,153 + Atu3271 0.80 -2.4 291,376 + +1.2 291,796 + +2.7 291,922 + -1.4 292,015 + Atu3272 0.13 -1.5 292,122 - Atu3272 0.22 -0.2 292,136 - Atu3272 0.24 +0.2 292,156 + Atu3272 0.25 -0.4 292,315 - Atu3272 0.39 +0.0 292,325 - Atu3272 0.39 +0.9 292,437 - Atu3272 0.49 -0.1 292,526 - Atu3272 0.56 -1.4 292,564 + Atu3272 0.59 -0.2 292,595 - Atu3272 0.62 -1.2 292,627 + Atu3272 0.65 +0.2 292,632 + Atu3272 0.65 -3.2 292,759 + Atu3272 0.76 -0.4 292,759 + Atu3272 0.76 -1.1 292,767 - Atu3272 0.76 +1.5 292,767 - Atu3272 0.76 +0.4 292,767 - Atu3272 0.76 +0.0 293,004 - +1.0 293,117 + -2.8 293,254 - +0.4 293,336 + +2.2 293,469 - Atu3273 0.12 +1.3 293,521 + Atu3273 0.16 -1.2 293,529 - Atu3273 0.17 -1.3 293,531 - Atu3273 0.17 +0.6 293,544 + Atu3273 0.18 +1.4 293,608 - Atu3273 0.23 -0.6 293,611 - Atu3273 0.23 +0.2 293,638 + Atu3273 0.25 -0.4 293,645 - Atu3273 0.26 +1.2 293,736 - Atu3273 0.33 +1.2 293,754 + Atu3273 0.34 +2.7 293,756 - Atu3273 0.34 +1.0 293,756 - Atu3273 0.34 -0.3 293,762 - Atu3273 0.35 +1.0 293,780 + Atu3273 0.36 -0.5 293,790 + Atu3273 0.37 +0.7 293,862 + Atu3273 0.43 -0.6 293,862 + Atu3273 0.43 -1.0 293,862 + Atu3273 0.43 +0.7 293,862 + Atu3273 0.43 +1.0 293,862 + Atu3273 0.43 +1.8 293,862 + Atu3273 0.43 +0.5 293,862 + Atu3273 0.43 +3.2 293,862 + Atu3273 0.43 +2.7 293,862 + Atu3273 0.43 -0.3 293,865 - Atu3273 0.43 +0.4 293,865 - Atu3273 0.43 -0.4 293,870 - Atu3273 0.43 -1.8 293,870 - Atu3273 0.43 +0.7 293,870 - Atu3273 0.43 +0.8 293,870 - Atu3273 0.43 -0.1 293,870 - Atu3273 0.43 +1.6 293,921 + Atu3273 0.47 +0.8 293,926 + Atu3273 0.48 +1.6 293,926 + Atu3273 0.48 +0.2 293,936 + Atu3273 0.48 +0.1 294,002 + Atu3273 0.54 +1.9
Or see this region's nucleotide sequence