Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0975 and Atu0976 overlap by 4 nucleotides Atu0976 and Atu0977 are separated by 153 nucleotides Atu0977 and Atu0978 are separated by 272 nucleotides
Atu0975: Atu0975 - cytochrome c-type synthesis protein, at 963,363 to 965,354
Atu0975
Atu0976: Atu0976 - cycL protein, at 965,351 to 965,947
Atu0976
Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672
Atu0977
Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703
Atu0978
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 965.349 kb on + strand at 965.443 kb on + strand, within Atu0976 at 965.453 kb on + strand, within Atu0976 at 965.488 kb on + strand, within Atu0976 at 966.163 kb on + strand at 966.266 kb on + strand, within Atu0977 at 966.390 kb on + strand, within Atu0977 at 966.550 kb on + strand, within Atu0977 at 966.673 kb on + strand, within Atu0977 at 966.846 kb on + strand, within Atu0977 at 967.183 kb on + strand, within Atu0977 at 967.265 kb on + strand, within Atu0977 at 967.511 kb on + strand, within Atu0977 at 967.580 kb on - strand at 967.582 kb on + strand at 967.582 kb on + strand at 967.752 kb on - strand at 967.828 kb on + strand at 967.896 kb on - strand at 967.924 kb on - strand at 967.991 kb on + strand at 968.051 kb on + strand, within Atu0978 at 968.059 kb on + strand, within Atu0978 at 968.060 kb on - strand, within Atu0978 at 968.101 kb on + strand, within Atu0978 at 968.144 kb on - strand, within Atu0978 at 968.187 kb on + strand, within Atu0978 at 968.191 kb on - strand, within Atu0978 at 968.234 kb on + strand, within Atu0978 at 968.242 kb on - strand, within Atu0978 at 968.275 kb on + strand, within Atu0978 at 968.347 kb on + strand, within Atu0978 at 968.384 kb on - strand, within Atu0978 at 968.397 kb on + strand, within Atu0978 at 968.405 kb on - strand, within Atu0978 at 968.594 kb on - strand, within Atu0978 at 968.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 965,349 + +1.5 965,443 + Atu0976 0.15 +0.9 965,453 + Atu0976 0.17 -0.6 965,488 + Atu0976 0.23 -1.1 966,163 + +0.8 966,266 + Atu0977 0.10 -2.3 966,390 + Atu0977 0.18 +0.0 966,550 + Atu0977 0.29 -0.7 966,673 + Atu0977 0.36 +1.3 966,846 + Atu0977 0.47 -2.6 967,183 + Atu0977 0.69 +1.3 967,265 + Atu0977 0.74 +1.3 967,511 + Atu0977 0.90 -2.8 967,580 - +1.3 967,582 + -1.3 967,582 + -2.4 967,752 - +3.3 967,828 + +0.8 967,896 - -1.7 967,924 - -3.1 967,991 + +2.3 968,051 + Atu0978 0.14 -1.4 968,059 + Atu0978 0.15 -0.7 968,060 - Atu0978 0.15 -2.5 968,101 + Atu0978 0.21 -1.8 968,144 - Atu0978 0.26 +1.3 968,187 + Atu0978 0.32 -2.2 968,191 - Atu0978 0.32 -1.7 968,234 + Atu0978 0.38 -1.6 968,242 - Atu0978 0.39 -0.8 968,275 + Atu0978 0.43 -1.0 968,347 + Atu0978 0.53 -2.5 968,384 - Atu0978 0.58 -1.2 968,397 + Atu0978 0.60 -3.7 968,405 - Atu0978 0.61 -2.5 968,594 - Atu0978 0.86 -2.1 968,663 - -0.2
Or see this region's nucleotide sequence