Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0927 and Atu0928 are separated by 374 nucleotides Atu0928 and Atu0929 are separated by 348 nucleotides
Atu0927: Atu0927 - LysE family transporter, at 914,897 to 915,505
Atu0927
Atu0928: Atu0928 - transcriptional regulator, LysR family, at 915,880 to 916,785
Atu0928
Atu0929: Atu0929 - amide hydrolase, at 917,134 to 918,441
Atu0929
Position (kb) 915
916
917 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 914.904 kb on + strand at 914.912 kb on - strand at 914.933 kb on - strand at 914.971 kb on - strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.112 kb on - strand, within Atu0927 at 915.201 kb on + strand, within Atu0927 at 915.219 kb on + strand, within Atu0927 at 915.222 kb on - strand, within Atu0927 at 915.227 kb on - strand, within Atu0927 at 915.229 kb on + strand, within Atu0927 at 915.356 kb on - strand, within Atu0927 at 915.362 kb on + strand, within Atu0927 at 915.600 kb on - strand at 915.690 kb on - strand at 915.692 kb on - strand at 915.803 kb on + strand at 915.826 kb on - strand at 916.078 kb on + strand, within Atu0928 at 916.340 kb on - strand, within Atu0928 at 916.347 kb on + strand, within Atu0928 at 916.355 kb on + strand, within Atu0928 at 916.355 kb on + strand, within Atu0928 at 916.363 kb on - strand, within Atu0928 at 916.444 kb on + strand, within Atu0928 at 916.469 kb on + strand, within Atu0928 at 916.503 kb on + strand, within Atu0928 at 916.503 kb on + strand, within Atu0928 at 916.508 kb on + strand, within Atu0928 at 916.508 kb on + strand, within Atu0928 at 916.511 kb on - strand, within Atu0928 at 916.511 kb on - strand, within Atu0928 at 916.533 kb on - strand, within Atu0928 at 916.551 kb on + strand, within Atu0928 at 916.620 kb on - strand, within Atu0928 at 916.649 kb on + strand, within Atu0928 at 916.657 kb on - strand, within Atu0928 at 916.658 kb on - strand, within Atu0928 at 916.760 kb on + strand at 916.763 kb on - strand at 916.768 kb on - strand at 916.780 kb on + strand at 916.781 kb on + strand at 916.797 kb on - strand at 916.813 kb on + strand at 916.816 kb on + strand at 916.847 kb on + strand at 916.866 kb on + strand at 916.893 kb on + strand at 916.927 kb on - strand at 916.984 kb on + strand at 916.984 kb on + strand at 916.992 kb on - strand at 916.994 kb on + strand at 917.010 kb on + strand at 917.018 kb on - strand at 917.038 kb on + strand at 917.096 kb on + strand at 917.183 kb on - strand at 917.227 kb on - strand at 917.323 kb on + strand, within Atu0929 at 917.503 kb on - strand, within Atu0929 at 917.645 kb on + strand, within Atu0929 at 917.658 kb on - strand, within Atu0929 at 917.688 kb on - strand, within Atu0929 at 917.740 kb on + strand, within Atu0929 at 917.762 kb on + strand, within Atu0929
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 914,904 + +0.4 914,912 - +1.1 914,933 - -0.1 914,971 - Atu0927 0.12 +0.4 915,009 + Atu0927 0.18 -0.2 915,009 + Atu0927 0.18 +0.4 915,009 + Atu0927 0.18 +0.5 915,017 - Atu0927 0.20 -0.7 915,017 - Atu0927 0.20 -3.3 915,017 - Atu0927 0.20 +0.5 915,112 - Atu0927 0.35 -0.5 915,201 + Atu0927 0.50 +1.0 915,219 + Atu0927 0.53 +0.5 915,222 - Atu0927 0.53 -0.8 915,227 - Atu0927 0.54 -0.1 915,229 + Atu0927 0.55 +0.2 915,356 - Atu0927 0.75 -0.5 915,362 + Atu0927 0.76 -1.3 915,600 - -2.8 915,690 - +0.9 915,692 - -0.5 915,803 + -2.8 915,826 - -0.1 916,078 + Atu0928 0.22 -1.0 916,340 - Atu0928 0.51 -0.8 916,347 + Atu0928 0.52 +0.2 916,355 + Atu0928 0.52 -0.1 916,355 + Atu0928 0.52 -0.0 916,363 - Atu0928 0.53 -0.3 916,444 + Atu0928 0.62 -1.6 916,469 + Atu0928 0.65 -0.8 916,503 + Atu0928 0.69 +0.7 916,503 + Atu0928 0.69 -0.0 916,508 + Atu0928 0.69 +1.1 916,508 + Atu0928 0.69 -1.0 916,511 - Atu0928 0.70 -0.5 916,511 - Atu0928 0.70 -1.0 916,533 - Atu0928 0.72 +0.7 916,551 + Atu0928 0.74 -0.3 916,620 - Atu0928 0.82 +0.5 916,649 + Atu0928 0.85 -3.2 916,657 - Atu0928 0.86 -0.2 916,658 - Atu0928 0.86 +0.3 916,760 + +0.3 916,763 - +0.8 916,768 - -1.1 916,780 + -2.1 916,781 + +2.0 916,797 - +1.6 916,813 + +0.7 916,816 + -0.2 916,847 + -1.7 916,866 + -4.4 916,893 + +0.5 916,927 - -3.1 916,984 + +1.0 916,984 + +0.0 916,992 - -1.1 916,994 + +0.3 917,010 + +0.3 917,018 - +0.2 917,038 + +0.0 917,096 + -1.4 917,183 - -2.8 917,227 - -0.1 917,323 + Atu0929 0.14 -0.9 917,503 - Atu0929 0.28 -0.2 917,645 + Atu0929 0.39 +0.7 917,658 - Atu0929 0.40 +0.2 917,688 - Atu0929 0.42 -1.4 917,740 + Atu0929 0.46 +0.6 917,762 + Atu0929 0.48 +0.0
Or see this region's nucleotide sequence