Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0893 and Atu0894 overlap by 8 nucleotides Atu0894 and Atu0895 are separated by 241 nucleotides
Atu0893: Atu0893 - ABC transporter, nucleotide binding/ATPase protein, at 883,625 to 884,722
Atu0893
Atu0894: Atu0894 - ABC transporter, membrane spanning protein, at 884,715 to 885,623
Atu0894
Atu0895: Atu0895 - ABC transporter, substrate binding protein, at 885,865 to 886,875
Atu0895
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.718 kb on - strand at 883.819 kb on - strand, within Atu0893 at 883.845 kb on + strand, within Atu0893 at 883.853 kb on - strand, within Atu0893 at 883.977 kb on - strand, within Atu0893 at 884.040 kb on + strand, within Atu0893 at 884.119 kb on - strand, within Atu0893 at 884.188 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.319 kb on + strand, within Atu0893 at 884.398 kb on - strand, within Atu0893 at 884.587 kb on - strand, within Atu0893 at 884.595 kb on - strand, within Atu0893 at 884.599 kb on + strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.623 kb on + strand at 884.623 kb on + strand at 884.629 kb on - strand at 884.720 kb on - strand at 884.801 kb on + strand at 884.809 kb on - strand, within Atu0894 at 884.893 kb on - strand, within Atu0894 at 884.952 kb on + strand, within Atu0894 at 885.098 kb on - strand, within Atu0894 at 885.122 kb on - strand, within Atu0894 at 885.171 kb on + strand, within Atu0894 at 885.502 kb on + strand, within Atu0894 at 885.568 kb on - strand at 885.607 kb on + strand at 885.669 kb on - strand at 885.683 kb on - strand at 885.684 kb on + strand at 885.775 kb on + strand at 885.806 kb on - strand at 885.829 kb on - strand at 885.996 kb on - strand, within Atu0895 at 886.002 kb on - strand, within Atu0895 at 886.191 kb on + strand, within Atu0895 at 886.345 kb on - strand, within Atu0895 at 886.346 kb on + strand, within Atu0895 at 886.559 kb on + strand, within Atu0895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 883,718 - -1.7 883,819 - Atu0893 0.18 -1.7 883,845 + Atu0893 0.20 +2.3 883,853 - Atu0893 0.21 -1.1 883,977 - Atu0893 0.32 -0.2 884,040 + Atu0893 0.38 +1.3 884,119 - Atu0893 0.45 -1.4 884,188 + Atu0893 0.51 -0.2 884,257 + Atu0893 0.58 +0.3 884,257 + Atu0893 0.58 +0.0 884,319 + Atu0893 0.63 +1.3 884,398 - Atu0893 0.70 -0.1 884,587 - Atu0893 0.88 -0.5 884,595 - Atu0893 0.88 -0.4 884,599 + Atu0893 0.89 -0.2 884,607 - Atu0893 0.89 +0.5 884,607 - Atu0893 0.89 -0.8 884,623 + +0.3 884,623 + -2.1 884,629 - +0.3 884,720 - -0.2 884,801 + +1.3 884,809 - Atu0894 0.10 -0.5 884,893 - Atu0894 0.20 -0.5 884,952 + Atu0894 0.26 +1.3 885,098 - Atu0894 0.42 +0.8 885,122 - Atu0894 0.45 -1.7 885,171 + Atu0894 0.50 -0.7 885,502 + Atu0894 0.87 -0.7 885,568 - +2.0 885,607 + +0.8 885,669 - -0.8 885,683 - -3.3 885,684 + -1.9 885,775 + +1.5 885,806 - -0.6 885,829 - -2.4 885,996 - Atu0895 0.13 +0.8 886,002 - Atu0895 0.14 +2.3 886,191 + Atu0895 0.32 -1.6 886,345 - Atu0895 0.47 +1.3 886,346 + Atu0895 0.48 +2.1 886,559 + Atu0895 0.69 -1.7
Or see this region's nucleotide sequence