Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8118 and Atu0351 are separated by 142 nucleotides Atu0351 and Atu0352 are separated by 16 nucleotides Atu0352 and Atu0353 are separated by 43 nucleotides Atu0353 and Atu0354 are separated by 69 nucleotides
Atu8118: Atu8118 - putative universal stress protein, at 345,749 to 346,240
Atu8118
Atu0351: Atu0351 - hypothetical protein, at 346,383 to 346,946
Atu0351
Atu0352: Atu0352 - hypothetical protein, at 346,963 to 347,631
Atu0352
Atu0353: Atu0353 - acetyltransferase, at 347,675 to 348,169
Atu0353
Atu0354: Atu0354 - ferric uptake regulator, at 348,239 to 348,667
Atu0354
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 345.979 kb on + strand, within Atu8118 at 345.979 kb on + strand, within Atu8118 at 345.987 kb on - strand, within Atu8118 at 345.990 kb on + strand, within Atu8118 at 345.998 kb on - strand, within Atu8118 at 347.601 kb on - strand at 347.622 kb on - strand at 347.622 kb on - strand at 347.726 kb on - strand, within Atu0353 at 347.770 kb on + strand, within Atu0353 at 347.843 kb on + strand, within Atu0353 at 347.927 kb on + strand, within Atu0353 at 347.965 kb on - strand, within Atu0353 at 347.996 kb on + strand, within Atu0353 at 348.004 kb on - strand, within Atu0353 at 348.024 kb on + strand, within Atu0353 at 348.025 kb on - strand, within Atu0353 at 348.056 kb on - strand, within Atu0353 at 348.061 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.112 kb on - strand, within Atu0353 at 348.126 kb on - strand at 348.134 kb on - strand at 348.240 kb on + strand at 348.271 kb on - strand at 348.299 kb on + strand, within Atu0354 at 348.307 kb on - strand, within Atu0354 at 348.362 kb on + strand, within Atu0354 at 348.389 kb on - strand, within Atu0354 at 348.409 kb on + strand, within Atu0354 at 348.420 kb on + strand, within Atu0354
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 345,979 + Atu8118 0.47 +0.3 345,979 + Atu8118 0.47 -0.2 345,987 - Atu8118 0.48 -1.4 345,990 + Atu8118 0.49 -1.8 345,998 - Atu8118 0.51 -0.4 347,601 - -1.2 347,622 - -1.7 347,622 - +0.6 347,726 - Atu0353 0.10 -1.7 347,770 + Atu0353 0.19 -2.2 347,843 + Atu0353 0.34 +0.5 347,927 + Atu0353 0.51 -1.2 347,965 - Atu0353 0.59 -0.1 347,996 + Atu0353 0.65 -1.1 348,004 - Atu0353 0.66 -3.7 348,024 + Atu0353 0.71 +0.4 348,025 - Atu0353 0.71 -1.5 348,056 - Atu0353 0.77 -0.3 348,061 - Atu0353 0.78 -3.8 348,086 - Atu0353 0.83 -0.4 348,086 - Atu0353 0.83 -0.5 348,112 - Atu0353 0.88 -2.5 348,126 - +1.8 348,134 - -1.2 348,240 + -0.1 348,271 - +1.2 348,299 + Atu0354 0.14 +1.4 348,307 - Atu0354 0.16 +1.2 348,362 + Atu0354 0.29 +1.6 348,389 - Atu0354 0.35 +0.6 348,409 + Atu0354 0.40 +2.0 348,420 + Atu0354 0.42 +1.2
Or see this region's nucleotide sequence