Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0061 and Atu0062 are separated by 49 nucleotides Atu0062 and Atu0063 are separated by 264 nucleotides
Atu0061: Atu0061 - ATP-dependent DNA helicase, at 63,196 to 65,004
Atu0061
Atu0062: Atu0062 - transcriptional regulator, ROK family, at 65,054 to 66,286
Atu0062
Atu0063: Atu0063 - ABC transporter, substrate binding protein (sugar), at 66,551 to 67,573
Atu0063
Position (kb) 65
66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 64.066 kb on + strand, within Atu0061 at 64.110 kb on + strand, within Atu0061 at 64.233 kb on + strand, within Atu0061 at 64.287 kb on + strand, within Atu0061 at 64.287 kb on + strand, within Atu0061 at 64.293 kb on - strand, within Atu0061 at 64.379 kb on + strand, within Atu0061 at 64.467 kb on + strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.622 kb on - strand, within Atu0061 at 64.763 kb on - strand, within Atu0061 at 64.775 kb on - strand, within Atu0061 at 64.788 kb on + strand, within Atu0061 at 64.911 kb on - strand at 65.124 kb on - strand at 65.477 kb on + strand, within Atu0062 at 65.520 kb on - strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.850 kb on + strand, within Atu0062 at 65.898 kb on + strand, within Atu0062 at 65.914 kb on + strand, within Atu0062 at 66.011 kb on - strand, within Atu0062 at 66.295 kb on + strand at 66.319 kb on + strand at 66.479 kb on - strand at 66.515 kb on + strand at 66.550 kb on + strand at 66.588 kb on + strand at 66.802 kb on + strand, within Atu0063 at 66.812 kb on + strand, within Atu0063 at 66.812 kb on + strand, within Atu0063 at 66.902 kb on + strand, within Atu0063 at 67.011 kb on - strand, within Atu0063 at 67.159 kb on - strand, within Atu0063
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 64,066 + Atu0061 0.48 -0.7 64,110 + Atu0061 0.51 -0.4 64,233 + Atu0061 0.57 +2.4 64,287 + Atu0061 0.60 -1.4 64,287 + Atu0061 0.60 +0.4 64,293 - Atu0061 0.61 -0.4 64,379 + Atu0061 0.65 +0.1 64,467 + Atu0061 0.70 -1.5 64,475 - Atu0061 0.71 -0.8 64,475 - Atu0061 0.71 +0.3 64,475 - Atu0061 0.71 -3.9 64,622 - Atu0061 0.79 +0.8 64,763 - Atu0061 0.87 -2.7 64,775 - Atu0061 0.87 +0.8 64,788 + Atu0061 0.88 -0.4 64,911 - -0.7 65,124 - -1.1 65,477 + Atu0062 0.34 -2.7 65,520 - Atu0062 0.38 -1.5 65,609 + Atu0062 0.45 -1.5 65,609 + Atu0062 0.45 -2.0 65,609 + Atu0062 0.45 -0.6 65,609 + Atu0062 0.45 -0.4 65,617 - Atu0062 0.46 -1.7 65,617 - Atu0062 0.46 -1.9 65,617 - Atu0062 0.46 +0.1 65,617 - Atu0062 0.46 -1.2 65,617 - Atu0062 0.46 -2.2 65,850 + Atu0062 0.65 -2.9 65,898 + Atu0062 0.68 -1.3 65,914 + Atu0062 0.70 -2.3 66,011 - Atu0062 0.78 -4.0 66,295 + -0.0 66,319 + +0.9 66,479 - -0.4 66,515 + -0.2 66,550 + +1.7 66,588 + -0.2 66,802 + Atu0063 0.25 -3.0 66,812 + Atu0063 0.26 -3.3 66,812 + Atu0063 0.26 -1.9 66,902 + Atu0063 0.34 +0.3 67,011 - Atu0063 0.45 -1.2 67,159 - Atu0063 0.59 -0.6
Or see this region's nucleotide sequence