Strain Fitness in Agrobacterium fabrum C58 around Atu5420

Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5419 and Atu5420 are separated by 54 nucleotidesAtu5420 and Atu5421 are separated by 84 nucleotides Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725 Atu5419 Atu5420: Atu5420 - ABC transporter substrate binding protein (putrescine), at 414,780 to 415,880 Atu5420 Atu5421: Atu5421 - ABC transporter membrane spanning protein (putrescine), at 415,965 to 416,948 Atu5421 Position (kb) 414 415 416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 413.807 kb on + strandat 413.832 kb on - strandat 413.918 kb on + strand, within Atu5419at 413.992 kb on + strand, within Atu5419at 413.993 kb on - strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.014 kb on + strand, within Atu5419at 414.072 kb on - strand, within Atu5419at 414.087 kb on - strand, within Atu5419at 414.093 kb on + strand, within Atu5419at 414.149 kb on + strand, within Atu5419at 414.159 kb on + strand, within Atu5419at 414.172 kb on + strand, within Atu5419at 414.180 kb on - strand, within Atu5419at 414.230 kb on - strand, within Atu5419at 414.252 kb on + strand, within Atu5419at 414.390 kb on - strand, within Atu5419at 414.399 kb on + strand, within Atu5419at 414.430 kb on + strand, within Atu5419at 414.435 kb on + strand, within Atu5419at 414.524 kb on + strand, within Atu5419at 414.597 kb on - strand, within Atu5419at 414.667 kb on + strandat 414.705 kb on + strandat 414.770 kb on + strandat 414.796 kb on - strandat 414.811 kb on + strandat 414.811 kb on + strandat 414.811 kb on + strandat 414.811 kb on + strandat 414.811 kb on + strandat 414.819 kb on - strandat 414.819 kb on - strandat 414.819 kb on - strandat 414.819 kb on - strandat 414.819 kb on - strandat 414.819 kb on - strandat 414.881 kb on + strandat 414.889 kb on - strandat 414.896 kb on + strand, within Atu5420at 414.934 kb on - strand, within Atu5420at 414.934 kb on - strand, within Atu5420at 415.084 kb on + strand, within Atu5420at 415.101 kb on - strand, within Atu5420at 415.111 kb on - strand, within Atu5420at 415.154 kb on - strand, within Atu5420at 415.156 kb on - strand, within Atu5420at 415.192 kb on - strand, within Atu5420at 415.233 kb on + strand, within Atu5420at 415.248 kb on - strand, within Atu5420at 415.289 kb on - strand, within Atu5420at 415.290 kb on + strand, within Atu5420at 415.291 kb on - strand, within Atu5420at 415.307 kb on - strand, within Atu5420at 415.328 kb on + strand, within Atu5420at 415.336 kb on - strand, within Atu5420at 415.363 kb on - strand, within Atu5420at 415.392 kb on - strand, within Atu5420at 415.459 kb on - strand, within Atu5420at 415.465 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.522 kb on - strand, within Atu5420at 415.558 kb on - strand, within Atu5420at 415.606 kb on + strand, within Atu5420at 415.617 kb on + strand, within Atu5420at 415.644 kb on + strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.655 kb on + strand, within Atu5420at 415.655 kb on + strand, within Atu5420at 415.665 kb on + strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.698 kb on + strand, within Atu5420at 415.722 kb on + strand, within Atu5420at 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.879 kb on + strandat 415.898 kb on + strandat 415.903 kb on + strandat 415.906 kb on - strandat 415.906 kb on - strandat 415.970 kb on + strandat 415.981 kb on + strandat 415.981 kb on + strandat 416.031 kb on - strandat 416.033 kb on + strandat 416.055 kb on + strandat 416.055 kb on + strandat 416.078 kb on - strand, within Atu5421at 416.160 kb on - strand, within Atu5421at 416.206 kb on - strand, within Atu5421at 416.247 kb on + strand, within Atu5421at 416.252 kb on + strand, within Atu5421at 416.255 kb on - strand, within Atu5421at 416.311 kb on + strand, within Atu5421at 416.417 kb on + strand, within Atu5421at 416.430 kb on + strand, within Atu5421at 416.438 kb on - strand, within Atu5421at 416.481 kb on - strand, within Atu5421at 416.539 kb on - strand, within Atu5421at 416.547 kb on + strand, within Atu5421at 416.552 kb on + strand, within Atu5421at 416.654 kb on - strand, within Atu5421at 416.657 kb on - strand, within Atu5421at 416.691 kb on - strand, within Atu5421at 416.746 kb on - strand, within Atu5421at 416.774 kb on - strand, within Atu5421at 416.820 kb on + strand, within Atu5421at 416.838 kb on - strand, within Atu5421at 416.846 kb on + strand, within Atu5421at 416.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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413,807 + -0.4
413,832 - -1.5
413,918 + Atu5419 0.18 -0.0
413,992 + Atu5419 0.25 -0.3
413,993 - Atu5419 0.25 -0.4
414,010 + Atu5419 0.27 +0.3
414,010 + Atu5419 0.27 +1.1
414,014 + Atu5419 0.27 -1.1
414,072 - Atu5419 0.33 -0.3
414,087 - Atu5419 0.35 -0.5
414,093 + Atu5419 0.35 +0.7
414,149 + Atu5419 0.41 +0.3
414,159 + Atu5419 0.42 +0.4
414,172 + Atu5419 0.44 +0.6
414,180 - Atu5419 0.44 +0.1
414,230 - Atu5419 0.49 +0.1
414,252 + Atu5419 0.52 -1.1
414,390 - Atu5419 0.66 -0.7
414,399 + Atu5419 0.67 +0.4
414,430 + Atu5419 0.70 -1.1
414,435 + Atu5419 0.70 +0.4
414,524 + Atu5419 0.79 +0.4
414,597 - Atu5419 0.87 +0.9
414,667 + -0.0
414,705 + -0.6
414,770 + +1.3
414,796 - +0.5
414,811 + -0.0
414,811 + -0.2
414,811 + +0.9
414,811 + -1.3
414,811 + -0.4
414,819 - -0.5
414,819 - -0.8
414,819 - -0.9
414,819 - +0.1
414,819 - -0.4
414,819 - -1.8
414,881 + +1.4
414,889 - -1.2
414,896 + Atu5420 0.11 -0.0
414,934 - Atu5420 0.14 +1.0
414,934 - Atu5420 0.14 -0.2
415,084 + Atu5420 0.28 -1.5
415,101 - Atu5420 0.29 -1.3
415,111 - Atu5420 0.30 -0.3
415,154 - Atu5420 0.34 +0.1
415,156 - Atu5420 0.34 +0.2
415,192 - Atu5420 0.37 -1.8
415,233 + Atu5420 0.41 -0.3
415,248 - Atu5420 0.43 -2.2
415,289 - Atu5420 0.46 -0.2
415,290 + Atu5420 0.46 -0.7
415,291 - Atu5420 0.46 -1.7
415,307 - Atu5420 0.48 -0.3
415,328 + Atu5420 0.50 -0.2
415,336 - Atu5420 0.50 -0.6
415,363 - Atu5420 0.53 +0.7
415,392 - Atu5420 0.56 +1.3
415,459 - Atu5420 0.62 -1.4
415,465 + Atu5420 0.62 +0.6
415,514 + Atu5420 0.67 -0.5
415,514 + Atu5420 0.67 +1.7
415,514 + Atu5420 0.67 -1.3
415,514 + Atu5420 0.67 -2.7
415,522 - Atu5420 0.67 +0.5
415,558 - Atu5420 0.71 -1.5
415,606 + Atu5420 0.75 +0.1
415,617 + Atu5420 0.76 +1.6
415,644 + Atu5420 0.78 -0.3
415,652 - Atu5420 0.79 +0.3
415,652 - Atu5420 0.79 -4.6
415,652 - Atu5420 0.79 +0.2
415,655 + Atu5420 0.79 -1.4
415,655 + Atu5420 0.79 +0.2
415,665 + Atu5420 0.80 +0.3
415,673 - Atu5420 0.81 +0.7
415,673 - Atu5420 0.81 -0.9
415,673 - Atu5420 0.81 -0.4
415,673 - Atu5420 0.81 -1.3
415,673 - Atu5420 0.81 -2.7
415,698 + Atu5420 0.83 -0.3
415,722 + Atu5420 0.86 -1.6
415,873 - +0.6
415,873 - -1.3
415,873 - +0.1
415,873 - +0.1
415,873 - -0.7
415,879 + +1.1
415,898 + -2.0
415,903 + +0.6
415,906 - -0.2
415,906 - -0.3
415,970 + +0.4
415,981 + -0.0
415,981 + -0.1
416,031 - -0.4
416,033 + -0.4
416,055 + +0.2
416,055 + +1.0
416,078 - Atu5421 0.11 -3.0
416,160 - Atu5421 0.20 -0.6
416,206 - Atu5421 0.24 -0.2
416,247 + Atu5421 0.29 +0.3
416,252 + Atu5421 0.29 +0.7
416,255 - Atu5421 0.29 -0.7
416,311 + Atu5421 0.35 +0.5
416,417 + Atu5421 0.46 +0.5
416,430 + Atu5421 0.47 +1.1
416,438 - Atu5421 0.48 +1.9
416,481 - Atu5421 0.52 -0.3
416,539 - Atu5421 0.58 +0.1
416,547 + Atu5421 0.59 +1.1
416,552 + Atu5421 0.60 -0.3
416,654 - Atu5421 0.70 +0.6
416,657 - Atu5421 0.70 -1.1
416,691 - Atu5421 0.74 +0.8
416,746 - Atu5421 0.79 +0.9
416,774 - Atu5421 0.82 -0.3
416,820 + Atu5421 0.87 +0.4
416,838 - Atu5421 0.89 -0.9
416,846 + Atu5421 0.90 +0.3
416,867 - +1.0

Or see this region's nucleotide sequence