Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0995 and Atu0996 are separated by 83 nucleotides Atu0996 and Atu0997 are separated by 104 nucleotides Atu0997 and Atu0998 are separated by 122 nucleotides
Atu0995: Atu0995 - hypothetical protein, at 991,737 to 992,480
Atu0995
Atu0996: Atu0996 - zinc-binding dehydrogenase, at 992,564 to 993,580
Atu0996
Atu0997: Atu0997 - hypothetical protein, at 993,685 to 994,074
Atu0997
Atu0998: Atu0998 - undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein, at 994,197 to 995,033
Atu0998
Position (kb) 992
993
994 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 991.617 kb on - strand at 991.675 kb on + strand at 991.778 kb on + strand at 991.786 kb on - strand at 991.786 kb on - strand at 991.943 kb on + strand, within Atu0995 at 991.956 kb on + strand, within Atu0995 at 991.974 kb on - strand, within Atu0995 at 992.012 kb on + strand, within Atu0995 at 992.019 kb on - strand, within Atu0995 at 992.049 kb on - strand, within Atu0995 at 992.072 kb on + strand, within Atu0995 at 992.080 kb on - strand, within Atu0995 at 992.111 kb on - strand, within Atu0995 at 992.170 kb on - strand, within Atu0995 at 992.176 kb on + strand, within Atu0995 at 992.193 kb on + strand, within Atu0995 at 992.221 kb on - strand, within Atu0995 at 992.294 kb on - strand, within Atu0995 at 992.312 kb on - strand, within Atu0995 at 992.526 kb on + strand at 992.612 kb on - strand at 992.673 kb on + strand, within Atu0996 at 992.678 kb on + strand, within Atu0996 at 992.681 kb on - strand, within Atu0996 at 992.743 kb on - strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.145 kb on - strand, within Atu0996 at 993.220 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.341 kb on - strand, within Atu0996 at 993.473 kb on - strand, within Atu0996 at 993.509 kb on + strand at 993.543 kb on + strand at 993.682 kb on - strand at 993.773 kb on + strand, within Atu0997 at 993.800 kb on - strand, within Atu0997 at 993.830 kb on + strand, within Atu0997 at 993.842 kb on + strand, within Atu0997 at 993.888 kb on + strand, within Atu0997 at 993.890 kb on - strand, within Atu0997
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 991,617 - +0.8 991,675 + +0.5 991,778 + -0.1 991,786 - -0.5 991,786 - +2.2 991,943 + Atu0995 0.28 -0.4 991,956 + Atu0995 0.29 +0.7 991,974 - Atu0995 0.32 -1.5 992,012 + Atu0995 0.37 -0.7 992,019 - Atu0995 0.38 +0.0 992,049 - Atu0995 0.42 -1.8 992,072 + Atu0995 0.45 -0.1 992,080 - Atu0995 0.46 +2.1 992,111 - Atu0995 0.50 -1.3 992,170 - Atu0995 0.58 +0.3 992,176 + Atu0995 0.59 -0.6 992,193 + Atu0995 0.61 -3.8 992,221 - Atu0995 0.65 -0.1 992,294 - Atu0995 0.75 -0.9 992,312 - Atu0995 0.77 +0.5 992,526 + -0.6 992,612 - +0.3 992,673 + Atu0996 0.11 +1.6 992,678 + Atu0996 0.11 +1.2 992,681 - Atu0996 0.12 -0.2 992,743 - Atu0996 0.18 +0.4 993,021 + Atu0996 0.45 +0.8 993,021 + Atu0996 0.45 +0.5 993,145 - Atu0996 0.57 -0.4 993,220 + Atu0996 0.65 -2.0 993,333 + Atu0996 0.76 +0.5 993,333 + Atu0996 0.76 +0.3 993,341 - Atu0996 0.76 -3.1 993,473 - Atu0996 0.89 +0.8 993,509 + +1.1 993,543 + +0.9 993,682 - -1.0 993,773 + Atu0997 0.23 -0.2 993,800 - Atu0997 0.29 -2.6 993,830 + Atu0997 0.37 +3.1 993,842 + Atu0997 0.40 -0.2 993,888 + Atu0997 0.52 +2.2 993,890 - Atu0997 0.53 +1.7
Or see this region's nucleotide sequence