Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0865 and Atu0866 are separated by 344 nucleotides Atu0866 and Atu0867 are separated by 24 nucleotides Atu0867 and Atu0868 are separated by 258 nucleotides
Atu0865: Atu0865 - transcriptional regulator, AraC family, at 862,009 to 862,815
Atu0865
Atu0866: Atu0866 - RhtB family transporter, at 863,160 to 863,771
Atu0866
Atu0867: Atu0867 - aldo/keto reductase, at 863,796 to 864,623
Atu0867
Atu0868: Atu0868 - hypothetical protein, at 864,882 to 865,589
Atu0868
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 862.862 kb on + strand at 862.872 kb on + strand at 862.970 kb on + strand at 863.003 kb on - strand at 863.003 kb on - strand at 863.020 kb on + strand at 863.042 kb on + strand at 863.060 kb on + strand at 863.126 kb on - strand at 863.134 kb on - strand at 863.145 kb on + strand at 863.153 kb on - strand at 863.153 kb on - strand at 863.158 kb on - strand at 863.219 kb on + strand at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.259 kb on - strand, within Atu0866 at 863.259 kb on - strand, within Atu0866 at 863.340 kb on + strand, within Atu0866 at 863.347 kb on + strand, within Atu0866 at 863.348 kb on - strand, within Atu0866 at 863.348 kb on - strand, within Atu0866 at 863.355 kb on - strand, within Atu0866 at 863.355 kb on - strand, within Atu0866 at 863.360 kb on - strand, within Atu0866 at 863.369 kb on + strand, within Atu0866 at 863.396 kb on + strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.515 kb on - strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.624 kb on - strand, within Atu0866 at 863.703 kb on + strand, within Atu0866 at 863.705 kb on + strand, within Atu0866 at 863.941 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.985 kb on - strand, within Atu0867 at 863.988 kb on + strand, within Atu0867 at 864.029 kb on + strand, within Atu0867 at 864.163 kb on - strand, within Atu0867 at 864.255 kb on - strand, within Atu0867 at 864.317 kb on - strand, within Atu0867 at 864.345 kb on - strand, within Atu0867 at 864.400 kb on + strand, within Atu0867 at 864.427 kb on - strand, within Atu0867 at 864.618 kb on + strand at 864.618 kb on + strand at 864.654 kb on - strand at 864.748 kb on + strand at 864.761 kb on - strand at 864.761 kb on - strand at 864.801 kb on + strand at 864.809 kb on - strand at 864.832 kb on + strand at 864.850 kb on + strand at 864.850 kb on + strand at 864.850 kb on + strand at 864.981 kb on - strand, within Atu0868 at 865.039 kb on - strand, within Atu0868 at 865.047 kb on + strand, within Atu0868 at 865.122 kb on + strand, within Atu0868 at 865.138 kb on + strand, within Atu0868 at 865.146 kb on - strand, within Atu0868 at 865.166 kb on + strand, within Atu0868 at 865.169 kb on - strand, within Atu0868 at 865.248 kb on - strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.263 kb on + strand, within Atu0868 at 865.271 kb on - strand, within Atu0868 at 865.276 kb on - strand, within Atu0868 at 865.283 kb on - strand, within Atu0868 at 865.325 kb on + strand, within Atu0868 at 865.333 kb on - strand, within Atu0868 at 865.412 kb on + strand, within Atu0868 at 865.430 kb on - strand, within Atu0868 at 865.441 kb on - strand, within Atu0868
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 862,862 + +0.7 862,872 + -2.0 862,970 + -0.6 863,003 - +0.5 863,003 - +2.2 863,020 + -0.8 863,042 + +0.9 863,060 + -1.3 863,126 - -0.5 863,134 - +0.7 863,145 + +0.6 863,153 - +0.5 863,153 - +0.3 863,158 - +0.2 863,219 + +0.4 863,251 + Atu0866 0.15 +1.4 863,251 + Atu0866 0.15 -0.0 863,251 + Atu0866 0.15 +0.9 863,251 + Atu0866 0.15 -0.3 863,251 + Atu0866 0.15 +0.9 863,251 + Atu0866 0.15 -0.4 863,259 - Atu0866 0.16 +1.8 863,259 - Atu0866 0.16 +1.0 863,340 + Atu0866 0.29 +0.7 863,347 + Atu0866 0.31 +0.3 863,348 - Atu0866 0.31 +0.1 863,348 - Atu0866 0.31 -1.2 863,355 - Atu0866 0.32 +0.4 863,355 - Atu0866 0.32 -0.4 863,360 - Atu0866 0.33 -0.0 863,369 + Atu0866 0.34 +0.5 863,396 + Atu0866 0.39 +0.2 863,404 - Atu0866 0.40 +0.2 863,404 - Atu0866 0.40 +1.9 863,404 - Atu0866 0.40 +1.1 863,515 - Atu0866 0.58 +0.2 863,616 + Atu0866 0.75 +1.0 863,616 + Atu0866 0.75 +0.0 863,616 + Atu0866 0.75 +1.3 863,624 - Atu0866 0.76 -0.2 863,703 + Atu0866 0.89 -2.5 863,705 + Atu0866 0.89 +2.0 863,941 + Atu0867 0.18 -0.9 863,977 + Atu0867 0.22 -1.6 863,977 + Atu0867 0.22 +0.6 863,977 + Atu0867 0.22 +0.8 863,977 + Atu0867 0.22 -0.7 863,985 - Atu0867 0.23 +0.1 863,988 + Atu0867 0.23 -0.4 864,029 + Atu0867 0.28 -0.3 864,163 - Atu0867 0.44 -0.6 864,255 - Atu0867 0.55 +0.4 864,317 - Atu0867 0.63 -0.5 864,345 - Atu0867 0.66 -0.9 864,400 + Atu0867 0.73 +0.4 864,427 - Atu0867 0.76 -0.3 864,618 + +0.0 864,618 + +0.3 864,654 - +0.2 864,748 + -1.9 864,761 - +0.6 864,761 - +2.2 864,801 + +0.6 864,809 - -0.3 864,832 + -0.3 864,850 + +0.5 864,850 + -0.7 864,850 + -0.3 864,981 - Atu0868 0.14 -0.4 865,039 - Atu0868 0.22 -1.6 865,047 + Atu0868 0.23 +0.1 865,122 + Atu0868 0.34 +0.7 865,138 + Atu0868 0.36 -0.4 865,146 - Atu0868 0.37 +0.2 865,166 + Atu0868 0.40 -0.4 865,169 - Atu0868 0.41 +0.1 865,248 - Atu0868 0.52 +0.4 865,263 + Atu0868 0.54 +0.3 865,263 + Atu0868 0.54 +0.2 865,263 + Atu0868 0.54 +1.3 865,271 - Atu0868 0.55 -1.2 865,276 - Atu0868 0.56 -0.5 865,283 - Atu0868 0.57 +0.5 865,325 + Atu0868 0.63 -1.1 865,333 - Atu0868 0.64 +0.2 865,412 + Atu0868 0.75 +0.2 865,430 - Atu0868 0.77 +0.5 865,441 - Atu0868 0.79 -0.5
Or see this region's nucleotide sequence