Strain Fitness in Agrobacterium fabrum C58 around Atu5446

Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5445 and Atu5446 are separated by 111 nucleotidesAtu5446 and Atu5447 are separated by 31 nucleotides Atu5445: Atu5445 - oxidoreductase, at 438,128 to 439,222 Atu5445 Atu5446: Atu5446 - cultivar specificity protein W78, at 439,334 to 440,236 Atu5446 Atu5447: Atu5447 - zinc-binding oxidoreductase, at 440,268 to 441,272 Atu5447 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.375 kb on + strand, within Atu5445at 438.375 kb on + strand, within Atu5445at 438.383 kb on - strand, within Atu5445at 438.466 kb on + strand, within Atu5445at 438.474 kb on - strand, within Atu5445at 438.666 kb on + strand, within Atu5445at 438.672 kb on + strand, within Atu5445at 438.694 kb on - strand, within Atu5445at 438.704 kb on - strand, within Atu5445at 438.803 kb on + strand, within Atu5445at 438.811 kb on - strand, within Atu5445at 438.811 kb on - strand, within Atu5445at 438.819 kb on - strand, within Atu5445at 438.843 kb on - strand, within Atu5445at 438.848 kb on + strand, within Atu5445at 438.863 kb on + strand, within Atu5445at 438.871 kb on - strand, within Atu5445at 438.895 kb on + strand, within Atu5445at 438.913 kb on - strand, within Atu5445at 438.927 kb on - strand, within Atu5445at 438.958 kb on - strand, within Atu5445at 439.004 kb on - strand, within Atu5445at 439.059 kb on - strand, within Atu5445at 439.120 kb on - strandat 439.122 kb on - strandat 439.133 kb on - strandat 439.149 kb on - strandat 439.172 kb on + strandat 439.226 kb on + strandat 439.240 kb on - strandat 439.257 kb on - strandat 439.257 kb on - strandat 439.257 kb on - strandat 439.355 kb on + strandat 439.483 kb on - strand, within Atu5446at 439.494 kb on + strand, within Atu5446at 439.498 kb on + strand, within Atu5446at 439.507 kb on + strand, within Atu5446at 439.523 kb on + strand, within Atu5446at 439.533 kb on + strand, within Atu5446at 439.536 kb on - strand, within Atu5446at 439.590 kb on + strand, within Atu5446at 439.594 kb on - strand, within Atu5446at 439.596 kb on - strand, within Atu5446at 439.735 kb on - strand, within Atu5446at 439.749 kb on + strand, within Atu5446at 439.781 kb on + strand, within Atu5446at 439.805 kb on + strand, within Atu5446at 439.806 kb on + strand, within Atu5446at 439.806 kb on + strand, within Atu5446at 439.814 kb on - strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.927 kb on - strand, within Atu5446at 439.927 kb on - strand, within Atu5446at 439.946 kb on - strand, within Atu5446at 439.989 kb on - strand, within Atu5446at 440.033 kb on + strand, within Atu5446at 440.033 kb on + strand, within Atu5446at 440.041 kb on - strand, within Atu5446at 440.283 kb on + strandat 440.297 kb on + strandat 440.388 kb on + strand, within Atu5447at 440.458 kb on + strand, within Atu5447at 440.507 kb on + strand, within Atu5447at 440.507 kb on + strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.587 kb on + strand, within Atu5447at 440.616 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.632 kb on - strand, within Atu5447at 440.635 kb on + strand, within Atu5447at 440.695 kb on + strand, within Atu5447at 440.791 kb on - strand, within Atu5447at 440.816 kb on + strand, within Atu5447at 440.824 kb on - strand, within Atu5447at 440.873 kb on + strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.949 kb on - strand, within Atu5447at 440.985 kb on + strand, within Atu5447at 440.988 kb on - strand, within Atu5447at 440.991 kb on + strand, within Atu5447at 441.086 kb on + strand, within Atu5447at 441.099 kb on - strand, within Atu5447at 441.109 kb on - strand, within Atu5447at 441.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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438,375 + Atu5445 0.23 -0.0
438,375 + Atu5445 0.23 -0.9
438,383 - Atu5445 0.23 -1.7
438,466 + Atu5445 0.31 +1.5
438,474 - Atu5445 0.32 +1.2
438,666 + Atu5445 0.49 -3.4
438,672 + Atu5445 0.50 +0.8
438,694 - Atu5445 0.52 +0.1
438,704 - Atu5445 0.53 -0.6
438,803 + Atu5445 0.62 +1.0
438,811 - Atu5445 0.62 +1.2
438,811 - Atu5445 0.62 +0.3
438,819 - Atu5445 0.63 +0.9
438,843 - Atu5445 0.65 -2.2
438,848 + Atu5445 0.66 -0.5
438,863 + Atu5445 0.67 +0.6
438,871 - Atu5445 0.68 +0.2
438,895 + Atu5445 0.70 -0.3
438,913 - Atu5445 0.72 +0.5
438,927 - Atu5445 0.73 -0.6
438,958 - Atu5445 0.76 +0.0
439,004 - Atu5445 0.80 -2.7
439,059 - Atu5445 0.85 +0.8
439,120 - -0.4
439,122 - -1.1
439,133 - -0.8
439,149 - +0.3
439,172 + +0.7
439,226 + -1.5
439,240 - -0.7
439,257 - -1.9
439,257 - +1.2
439,257 - -1.0
439,355 + +0.9
439,483 - Atu5446 0.17 -1.1
439,494 + Atu5446 0.18 -2.0
439,498 + Atu5446 0.18 -1.6
439,507 + Atu5446 0.19 -0.6
439,523 + Atu5446 0.21 +0.7
439,533 + Atu5446 0.22 +0.5
439,536 - Atu5446 0.22 -0.6
439,590 + Atu5446 0.28 +0.0
439,594 - Atu5446 0.29 -0.2
439,596 - Atu5446 0.29 +0.1
439,735 - Atu5446 0.44 +0.7
439,749 + Atu5446 0.46 -0.4
439,781 + Atu5446 0.50 -2.0
439,805 + Atu5446 0.52 -0.0
439,806 + Atu5446 0.52 -1.3
439,806 + Atu5446 0.52 -1.3
439,814 - Atu5446 0.53 -0.6
439,816 + Atu5446 0.53 +0.5
439,816 + Atu5446 0.53 +0.5
439,816 + Atu5446 0.53 -0.5
439,927 - Atu5446 0.66 +0.8
439,927 - Atu5446 0.66 -1.2
439,946 - Atu5446 0.68 -2.7
439,989 - Atu5446 0.73 -0.3
440,033 + Atu5446 0.77 +0.4
440,033 + Atu5446 0.77 +0.2
440,041 - Atu5446 0.78 -1.8
440,283 + +0.0
440,297 + +0.5
440,388 + Atu5447 0.12 -0.7
440,458 + Atu5447 0.19 -2.6
440,507 + Atu5447 0.24 -0.3
440,507 + Atu5447 0.24 -2.1
440,515 - Atu5447 0.25 -0.4
440,515 - Atu5447 0.25 -2.5
440,515 - Atu5447 0.25 +2.0
440,587 + Atu5447 0.32 +0.3
440,616 - Atu5447 0.35 -0.8
440,628 - Atu5447 0.36 +1.3
440,628 - Atu5447 0.36 +0.5
440,632 - Atu5447 0.36 +1.1
440,635 + Atu5447 0.37 +0.4
440,695 + Atu5447 0.42 +1.2
440,791 - Atu5447 0.52 -0.0
440,816 + Atu5447 0.55 +0.3
440,824 - Atu5447 0.55 +0.2
440,873 + Atu5447 0.60 +1.3
440,898 - Atu5447 0.63 -3.5
440,898 - Atu5447 0.63 +1.5
440,949 - Atu5447 0.68 +0.3
440,985 + Atu5447 0.71 -0.5
440,988 - Atu5447 0.72 -0.2
440,991 + Atu5447 0.72 -0.4
441,086 + Atu5447 0.81 +1.5
441,099 - Atu5447 0.83 +1.0
441,109 - Atu5447 0.84 -2.3
441,223 - -0.2

Or see this region's nucleotide sequence