Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5098 and Atu5099 are separated by 13 nucleotides Atu5099 and Atu5100 overlap by 4 nucleotides
Atu5098: Atu5098 - hypothetical protein, at 102,464 to 103,216
Atu5098
Atu5099: Atu5099 - hypothetical protein, at 103,230 to 104,648
Atu5099
Atu5100: Atu5100 - DNA polymerase III, alpha chain, at 104,645 to 107,902
Atu5100
Position (kb) 103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 102.301 kb on + strand at 102.359 kb on - strand at 102.364 kb on + strand at 102.372 kb on - strand at 102.372 kb on - strand at 102.372 kb on - strand at 102.468 kb on + strand at 102.473 kb on + strand at 102.521 kb on - strand at 102.555 kb on + strand, within Atu5098 at 102.601 kb on + strand, within Atu5098 at 102.704 kb on - strand, within Atu5098 at 102.726 kb on + strand, within Atu5098 at 102.739 kb on - strand, within Atu5098 at 102.767 kb on + strand, within Atu5098 at 102.767 kb on + strand, within Atu5098 at 102.801 kb on + strand, within Atu5098 at 102.801 kb on + strand, within Atu5098 at 102.803 kb on + strand, within Atu5098 at 102.812 kb on + strand, within Atu5098 at 102.820 kb on - strand, within Atu5098 at 102.889 kb on + strand, within Atu5098 at 102.957 kb on + strand, within Atu5098 at 102.975 kb on - strand, within Atu5098 at 102.975 kb on - strand, within Atu5098 at 103.060 kb on + strand, within Atu5098 at 103.060 kb on + strand, within Atu5098 at 103.067 kb on + strand, within Atu5098 at 103.090 kb on - strand, within Atu5098 at 103.147 kb on - strand at 103.209 kb on - strand at 103.296 kb on - strand at 103.309 kb on - strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.350 kb on - strand at 103.379 kb on + strand, within Atu5099 at 103.387 kb on - strand, within Atu5099 at 103.415 kb on + strand, within Atu5099 at 103.517 kb on - strand, within Atu5099 at 103.584 kb on + strand, within Atu5099 at 103.592 kb on - strand, within Atu5099 at 103.592 kb on - strand, within Atu5099 at 103.617 kb on - strand, within Atu5099 at 103.643 kb on + strand, within Atu5099 at 103.643 kb on + strand, within Atu5099 at 103.742 kb on + strand, within Atu5099 at 103.762 kb on + strand, within Atu5099 at 103.770 kb on - strand, within Atu5099 at 103.849 kb on + strand, within Atu5099 at 103.857 kb on - strand, within Atu5099 at 103.857 kb on - strand, within Atu5099 at 103.876 kb on + strand, within Atu5099 at 103.974 kb on - strand, within Atu5099 at 103.976 kb on + strand, within Atu5099 at 103.981 kb on + strand, within Atu5099 at 103.981 kb on + strand, within Atu5099 at 104.011 kb on + strand, within Atu5099 at 104.125 kb on + strand, within Atu5099 at 104.163 kb on - strand, within Atu5099 at 104.176 kb on + strand, within Atu5099 at 104.181 kb on + strand, within Atu5099 at 104.184 kb on - strand, within Atu5099 at 104.186 kb on + strand, within Atu5099 at 104.189 kb on - strand, within Atu5099 at 104.191 kb on + strand, within Atu5099 at 104.196 kb on + strand, within Atu5099 at 104.258 kb on - strand, within Atu5099 at 104.303 kb on + strand, within Atu5099 at 104.332 kb on - strand, within Atu5099 at 104.352 kb on - strand, within Atu5099 at 104.377 kb on + strand, within Atu5099 at 104.382 kb on + strand, within Atu5099 at 104.416 kb on + strand, within Atu5099 at 104.424 kb on - strand, within Atu5099 at 104.458 kb on - strand, within Atu5099 at 104.677 kb on + strand at 104.722 kb on - strand at 104.731 kb on + strand at 104.784 kb on - strand at 104.795 kb on + strand at 104.795 kb on + strand at 104.795 kb on + strand at 104.803 kb on - strand at 104.836 kb on - strand at 104.962 kb on + strand at 105.031 kb on + strand, within Atu5100 at 105.163 kb on + strand, within Atu5100 at 105.226 kb on - strand, within Atu5100 at 105.227 kb on + strand, within Atu5100 at 105.296 kb on - strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.523 kb on + strand, within Atu5100 at 105.529 kb on - strand, within Atu5100 at 105.529 kb on - strand, within Atu5100 at 105.543 kb on + strand, within Atu5100 at 105.592 kb on + strand, within Atu5100 at 105.600 kb on - strand, within Atu5100 at 105.617 kb on + strand, within Atu5100 at 105.637 kb on + strand, within Atu5100 at 105.645 kb on - strand, within Atu5100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 102,301 + +1.2 102,359 - -1.0 102,364 + -0.0 102,372 - -0.0 102,372 - -2.0 102,372 - -2.4 102,468 + +0.3 102,473 + -1.3 102,521 - -1.6 102,555 + Atu5098 0.12 -0.8 102,601 + Atu5098 0.18 -0.8 102,704 - Atu5098 0.32 -0.1 102,726 + Atu5098 0.35 -0.0 102,739 - Atu5098 0.37 -1.4 102,767 + Atu5098 0.40 -0.4 102,767 + Atu5098 0.40 -1.9 102,801 + Atu5098 0.45 -0.7 102,801 + Atu5098 0.45 -3.7 102,803 + Atu5098 0.45 -0.9 102,812 + Atu5098 0.46 +0.1 102,820 - Atu5098 0.47 -0.1 102,889 + Atu5098 0.56 -0.7 102,957 + Atu5098 0.65 -0.5 102,975 - Atu5098 0.68 -0.9 102,975 - Atu5098 0.68 -1.0 103,060 + Atu5098 0.79 -0.6 103,060 + Atu5098 0.79 +0.1 103,067 + Atu5098 0.80 +0.8 103,090 - Atu5098 0.83 -0.3 103,147 - -0.8 103,209 - +0.7 103,296 - -0.0 103,309 - -1.0 103,342 + -0.1 103,342 + +0.3 103,350 - -0.7 103,379 + Atu5099 0.11 -0.5 103,387 - Atu5099 0.11 +0.1 103,415 + Atu5099 0.13 -2.9 103,517 - Atu5099 0.20 -2.1 103,584 + Atu5099 0.25 -2.5 103,592 - Atu5099 0.26 +0.2 103,592 - Atu5099 0.26 +0.4 103,617 - Atu5099 0.27 -0.4 103,643 + Atu5099 0.29 +0.1 103,643 + Atu5099 0.29 -1.9 103,742 + Atu5099 0.36 +1.1 103,762 + Atu5099 0.37 -1.7 103,770 - Atu5099 0.38 -1.1 103,849 + Atu5099 0.44 -0.9 103,857 - Atu5099 0.44 -0.5 103,857 - Atu5099 0.44 -0.1 103,876 + Atu5099 0.46 -2.0 103,974 - Atu5099 0.52 -0.3 103,976 + Atu5099 0.53 +0.1 103,981 + Atu5099 0.53 -1.3 103,981 + Atu5099 0.53 -4.7 104,011 + Atu5099 0.55 -1.0 104,125 + Atu5099 0.63 -1.3 104,163 - Atu5099 0.66 -0.4 104,176 + Atu5099 0.67 -1.2 104,181 + Atu5099 0.67 -1.0 104,184 - Atu5099 0.67 -1.5 104,186 + Atu5099 0.67 +0.4 104,189 - Atu5099 0.68 -1.0 104,191 + Atu5099 0.68 -1.3 104,196 + Atu5099 0.68 -1.3 104,258 - Atu5099 0.72 -0.0 104,303 + Atu5099 0.76 +0.1 104,332 - Atu5099 0.78 -0.0 104,352 - Atu5099 0.79 -0.7 104,377 + Atu5099 0.81 -0.9 104,382 + Atu5099 0.81 -0.7 104,416 + Atu5099 0.84 +1.3 104,424 - Atu5099 0.84 -3.2 104,458 - Atu5099 0.87 -0.4 104,677 + -1.0 104,722 - -0.3 104,731 + -0.6 104,784 - -0.8 104,795 + -0.9 104,795 + +3.2 104,795 + +1.3 104,803 - -1.9 104,836 - +0.7 104,962 + -1.2 105,031 + Atu5100 0.12 -1.3 105,163 + Atu5100 0.16 -1.6 105,226 - Atu5100 0.18 -1.7 105,227 + Atu5100 0.18 -2.3 105,296 - Atu5100 0.20 -1.5 105,521 + Atu5100 0.27 -0.2 105,521 + Atu5100 0.27 -0.6 105,521 + Atu5100 0.27 -0.4 105,523 + Atu5100 0.27 -0.5 105,529 - Atu5100 0.27 -0.3 105,529 - Atu5100 0.27 -1.1 105,543 + Atu5100 0.28 -2.6 105,592 + Atu5100 0.29 -0.6 105,600 - Atu5100 0.29 -0.2 105,617 + Atu5100 0.30 +0.7 105,637 + Atu5100 0.30 -0.3 105,645 - Atu5100 0.31 -0.5
Or see this region's nucleotide sequence