Strain Fitness in Agrobacterium fabrum C58 around Atu3781

Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3780 and Atu3781 are separated by 251 nucleotidesAtu3781 and Atu3782 overlap by 4 nucleotides Atu3780: Atu3780 - hypothetical protein, at 863,192 to 864,427 Atu3780 Atu3781: Atu3781 - two component response regulator, at 864,679 to 865,353 Atu3781 Atu3782: Atu3782 - two component sensor kinase, at 865,350 to 866,705 Atu3782 Position (kb) 864 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1at 863.816 kb on + strand, within Atu3780at 863.856 kb on + strand, within Atu3780at 864.159 kb on + strand, within Atu3780at 864.159 kb on + strand, within Atu3780at 864.167 kb on - strand, within Atu3780at 864.217 kb on - strand, within Atu3780at 864.217 kb on - strand, within Atu3780at 864.532 kb on + strandat 864.545 kb on - strandat 864.599 kb on - strandat 864.724 kb on - strandat 864.724 kb on - strandat 864.741 kb on - strandat 864.762 kb on - strand, within Atu3781at 864.796 kb on + strand, within Atu3781at 864.796 kb on + strand, within Atu3781at 864.804 kb on - strand, within Atu3781at 864.804 kb on - strand, within Atu3781at 864.815 kb on + strand, within Atu3781at 864.934 kb on + strand, within Atu3781at 864.982 kb on + strand, within Atu3781at 865.055 kb on + strand, within Atu3781at 865.091 kb on + strand, within Atu3781at 865.173 kb on + strand, within Atu3781at 865.175 kb on + strand, within Atu3781at 865.181 kb on - strand, within Atu3781at 865.181 kb on - strand, within Atu3781at 865.186 kb on - strand, within Atu3781at 865.231 kb on + strand, within Atu3781at 865.508 kb on - strand, within Atu3782at 865.525 kb on + strand, within Atu3782at 865.606 kb on + strand, within Atu3782at 865.606 kb on + strand, within Atu3782at 865.624 kb on - strand, within Atu3782at 865.624 kb on - strand, within Atu3782at 865.667 kb on - strand, within Atu3782at 865.743 kb on + strand, within Atu3782at 865.829 kb on - strand, within Atu3782at 865.863 kb on - strand, within Atu3782at 865.940 kb on + strand, within Atu3782at 865.948 kb on - strand, within Atu3782at 865.962 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 866.139 kb on + strand, within Atu3782at 866.209 kb on + strand, within Atu3782at 866.222 kb on - strand, within Atu3782at 866.265 kb on + strand, within Atu3782at 866.274 kb on - strand, within Atu3782at 866.294 kb on + strand, within Atu3782at 866.294 kb on + strand, within Atu3782at 866.302 kb on - strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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863,816 + Atu3780 0.50 -0.2
863,856 + Atu3780 0.54 +0.8
864,159 + Atu3780 0.78 -0.2
864,159 + Atu3780 0.78 +0.8
864,167 - Atu3780 0.79 +0.1
864,217 - Atu3780 0.83 -0.2
864,217 - Atu3780 0.83 -0.1
864,532 + -1.2
864,545 - -0.9
864,599 - +1.4
864,724 - +0.4
864,724 - +0.4
864,741 - +0.8
864,762 - Atu3781 0.12 -1.4
864,796 + Atu3781 0.17 -0.6
864,796 + Atu3781 0.17 +0.8
864,804 - Atu3781 0.19 +0.9
864,804 - Atu3781 0.19 -0.3
864,815 + Atu3781 0.20 -2.3
864,934 + Atu3781 0.38 -0.8
864,982 + Atu3781 0.45 -0.2
865,055 + Atu3781 0.56 -1.9
865,091 + Atu3781 0.61 -0.3
865,173 + Atu3781 0.73 +0.3
865,175 + Atu3781 0.73 -2.2
865,181 - Atu3781 0.74 +0.4
865,181 - Atu3781 0.74 -2.8
865,186 - Atu3781 0.75 -0.5
865,231 + Atu3781 0.82 -1.8
865,508 - Atu3782 0.12 -0.7
865,525 + Atu3782 0.13 +1.6
865,606 + Atu3782 0.19 -0.2
865,606 + Atu3782 0.19 +0.5
865,624 - Atu3782 0.20 -2.4
865,624 - Atu3782 0.20 +0.1
865,667 - Atu3782 0.23 -1.4
865,743 + Atu3782 0.29 -0.8
865,829 - Atu3782 0.35 +0.8
865,863 - Atu3782 0.38 -1.9
865,940 + Atu3782 0.44 +0.1
865,948 - Atu3782 0.44 +0.1
865,962 - Atu3782 0.45 -0.4
865,967 - Atu3782 0.46 +0.0
865,967 - Atu3782 0.46 +0.5
865,967 - Atu3782 0.46 +0.7
866,139 + Atu3782 0.58 +0.2
866,209 + Atu3782 0.63 +0.0
866,222 - Atu3782 0.64 +0.1
866,265 + Atu3782 0.67 -1.7
866,274 - Atu3782 0.68 +0.8
866,294 + Atu3782 0.70 -0.8
866,294 + Atu3782 0.70 +0.5
866,302 - Atu3782 0.70 +0.8
866,341 + Atu3782 0.73 +0.2
866,341 + Atu3782 0.73 -0.1
866,341 + Atu3782 0.73 -1.7
866,349 - Atu3782 0.74 -0.5
866,349 - Atu3782 0.74 +0.2
866,349 - Atu3782 0.74 +1.3
866,349 - Atu3782 0.74 +0.1

Or see this region's nucleotide sequence