Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3311 and Atu3312 are separated by 52 nucleotides Atu3312 and Atu3313 are separated by 13 nucleotides Atu3313 and Atu3314 are separated by 14 nucleotides
Atu3311: Atu3311 - phosphomannose isomerase, at 341,868 to 343,052
Atu3311
Atu3312: Atu3312 - hypothetical protein, at 343,105 to 344,067
Atu3312
Atu3313: Atu3313 - hypothetical protein, at 344,081 to 344,584
Atu3313
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Position (kb) 343
344
345 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 342.138 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.364 kb on - strand, within Atu3311 at 342.403 kb on + strand, within Atu3311 at 342.440 kb on + strand, within Atu3311 at 342.440 kb on + strand, within Atu3311 at 342.485 kb on - strand, within Atu3311 at 342.499 kb on + strand, within Atu3311 at 342.560 kb on + strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.628 kb on + strand, within Atu3311 at 342.680 kb on + strand, within Atu3311 at 342.819 kb on + strand, within Atu3311 at 342.868 kb on - strand, within Atu3311 at 342.871 kb on + strand, within Atu3311 at 342.886 kb on + strand, within Atu3311 at 342.906 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.928 kb on - strand, within Atu3311 at 342.935 kb on - strand at 343.004 kb on + strand at 343.044 kb on + strand at 343.108 kb on + strand at 343.142 kb on - strand at 343.284 kb on + strand, within Atu3312 at 343.318 kb on - strand, within Atu3312 at 343.322 kb on + strand, within Atu3312 at 343.328 kb on - strand, within Atu3312 at 343.463 kb on + strand, within Atu3312 at 343.515 kb on - strand, within Atu3312 at 343.678 kb on + strand, within Atu3312 at 343.735 kb on - strand, within Atu3312 at 343.750 kb on + strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.779 kb on - strand, within Atu3312 at 343.784 kb on - strand, within Atu3312 at 343.834 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.965 kb on - strand, within Atu3312 at 344.079 kb on + strand at 344.085 kb on - strand at 344.198 kb on + strand, within Atu3313 at 344.212 kb on + strand, within Atu3313 at 344.302 kb on - strand, within Atu3313 at 344.311 kb on - strand, within Atu3313 at 344.339 kb on - strand, within Atu3313 at 344.362 kb on - strand, within Atu3313 at 344.548 kb on - strand at 344.582 kb on + strand at 344.669 kb on + strand at 344.683 kb on + strand at 344.691 kb on - strand at 344.717 kb on - strand at 344.721 kb on + strand at 344.744 kb on - strand at 344.773 kb on - strand at 344.797 kb on + strand, within Atu3314 at 344.840 kb on + strand, within Atu3314 at 344.840 kb on + strand, within Atu3314 at 344.843 kb on - strand, within Atu3314 at 344.900 kb on + strand, within Atu3314 at 344.960 kb on + strand, within Atu3314 at 345.058 kb on + strand, within Atu3314
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 342,138 - Atu3311 0.23 -3.3 342,148 - Atu3311 0.24 -2.2 342,148 - Atu3311 0.24 -4.9 342,364 - Atu3311 0.42 -3.4 342,403 + Atu3311 0.45 -3.3 342,440 + Atu3311 0.48 -1.6 342,440 + Atu3311 0.48 -4.9 342,485 - Atu3311 0.52 -3.9 342,499 + Atu3311 0.53 -5.5 342,560 + Atu3311 0.58 -4.3 342,568 - Atu3311 0.59 -6.8 342,568 - Atu3311 0.59 -8.1 342,568 - Atu3311 0.59 -3.8 342,570 + Atu3311 0.59 -2.2 342,570 + Atu3311 0.59 -5.3 342,570 + Atu3311 0.59 -6.8 342,570 + Atu3311 0.59 -5.0 342,570 + Atu3311 0.59 -5.3 342,578 - Atu3311 0.60 -2.2 342,578 - Atu3311 0.60 -3.3 342,578 - Atu3311 0.60 -2.3 342,628 + Atu3311 0.64 -5.7 342,680 + Atu3311 0.69 -1.5 342,819 + Atu3311 0.80 -4.0 342,868 - Atu3311 0.84 -4.5 342,871 + Atu3311 0.85 -6.1 342,886 + Atu3311 0.86 -5.2 342,906 + Atu3311 0.88 -3.7 342,920 + Atu3311 0.89 -5.0 342,920 + Atu3311 0.89 -3.1 342,920 + Atu3311 0.89 -2.9 342,928 - Atu3311 0.89 -4.7 342,935 - -3.1 343,004 + -4.1 343,044 + +3.6 343,108 + -1.2 343,142 - -1.0 343,284 + Atu3312 0.19 +0.7 343,318 - Atu3312 0.22 -3.0 343,322 + Atu3312 0.23 -1.4 343,328 - Atu3312 0.23 -0.3 343,463 + Atu3312 0.37 +0.4 343,515 - Atu3312 0.43 -0.7 343,678 + Atu3312 0.60 +0.3 343,735 - Atu3312 0.65 +0.3 343,750 + Atu3312 0.67 -0.7 343,758 - Atu3312 0.68 +0.5 343,758 - Atu3312 0.68 -1.6 343,779 - Atu3312 0.70 -0.1 343,784 - Atu3312 0.71 +0.6 343,834 - Atu3312 0.76 -0.6 343,858 - Atu3312 0.78 +1.0 343,858 - Atu3312 0.78 -0.4 343,965 - Atu3312 0.89 -0.1 344,079 + +0.1 344,085 - +0.2 344,198 + Atu3313 0.23 -1.1 344,212 + Atu3313 0.26 -1.7 344,302 - Atu3313 0.44 -4.2 344,311 - Atu3313 0.46 -0.0 344,339 - Atu3313 0.51 +0.9 344,362 - Atu3313 0.56 +0.1 344,548 - +0.4 344,582 + +0.5 344,669 + -0.3 344,683 + +0.8 344,691 - -0.2 344,717 - -0.1 344,721 + -0.9 344,744 - -3.1 344,773 - -2.0 344,797 + Atu3314 0.10 -0.2 344,840 + Atu3314 0.12 -0.8 344,840 + Atu3314 0.12 -0.1 344,843 - Atu3314 0.13 -0.3 344,900 + Atu3314 0.16 +0.5 344,960 + Atu3314 0.19 +0.8 345,058 + Atu3314 0.24 +0.7
Or see this region's nucleotide sequence