Experiment: Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3308 and Atu3309 overlap by 4 nucleotides Atu3309 and Atu8187 are separated by 94 nucleotides
Atu3308: Atu3308 - celB protein, at 335,771 to 338,254
Atu3308
Atu3309: Atu3309 - cellulose synthase, at 338,251 to 340,440
Atu3309
Atu8187: Atu8187 - hypothetical protein, at 340,535 to 341,434
Atu8187
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.257 kb on + strand, within Atu3308 at 337.308 kb on - strand, within Atu3308 at 337.471 kb on + strand, within Atu3308 at 337.581 kb on - strand, within Atu3308 at 337.602 kb on + strand, within Atu3308 at 337.704 kb on - strand, within Atu3308 at 337.709 kb on - strand, within Atu3308 at 337.733 kb on + strand, within Atu3308 at 337.788 kb on - strand, within Atu3308 at 337.879 kb on + strand, within Atu3308 at 337.894 kb on + strand, within Atu3308 at 337.897 kb on - strand, within Atu3308 at 337.902 kb on - strand, within Atu3308 at 337.948 kb on + strand, within Atu3308 at 338.059 kb on + strand at 338.080 kb on - strand at 338.180 kb on - strand at 338.210 kb on + strand at 338.210 kb on + strand at 338.218 kb on - strand at 338.218 kb on - strand at 338.239 kb on - strand at 338.239 kb on - strand at 338.262 kb on - strand at 338.330 kb on + strand at 338.353 kb on + strand at 338.434 kb on + strand at 338.567 kb on + strand, within Atu3309 at 338.705 kb on - strand, within Atu3309 at 338.738 kb on + strand, within Atu3309 at 338.807 kb on + strand, within Atu3309 at 338.944 kb on + strand, within Atu3309 at 338.993 kb on - strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.030 kb on + strand, within Atu3309 at 339.108 kb on + strand, within Atu3309 at 339.109 kb on + strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.127 kb on - strand, within Atu3309 at 339.188 kb on + strand, within Atu3309 at 339.204 kb on - strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.245 kb on + strand, within Atu3309 at 339.315 kb on - strand, within Atu3309 at 339.345 kb on - strand, within Atu3309 at 339.399 kb on + strand, within Atu3309 at 339.399 kb on - strand, within Atu3309 at 339.423 kb on + strand, within Atu3309 at 339.457 kb on + strand, within Atu3309 at 339.484 kb on + strand, within Atu3309 at 339.561 kb on + strand, within Atu3309 at 339.561 kb on + strand, within Atu3309 at 339.569 kb on - strand, within Atu3309 at 339.608 kb on - strand, within Atu3309 at 339.638 kb on - strand, within Atu3309 at 339.956 kb on + strand, within Atu3309 at 339.979 kb on - strand, within Atu3309 at 340.022 kb on - strand, within Atu3309 at 340.053 kb on - strand, within Atu3309 at 340.137 kb on + strand, within Atu3309 at 340.160 kb on + strand, within Atu3309 at 340.235 kb on + strand at 340.243 kb on - strand at 340.243 kb on - strand at 340.306 kb on + strand at 340.331 kb on - strand at 340.331 kb on - strand at 340.538 kb on + strand at 340.630 kb on + strand, within Atu8187 at 340.637 kb on + strand, within Atu8187 at 340.708 kb on - strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.851 kb on + strand, within Atu8187 at 340.859 kb on - strand, within Atu8187 at 340.905 kb on + strand, within Atu8187 at 340.920 kb on - strand, within Atu8187 at 341.302 kb on + strand, within Atu8187
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 337,257 + Atu3308 0.60 -0.3 337,308 - Atu3308 0.62 +0.1 337,471 + Atu3308 0.68 +0.9 337,581 - Atu3308 0.73 -0.6 337,602 + Atu3308 0.74 +0.2 337,704 - Atu3308 0.78 -0.9 337,709 - Atu3308 0.78 -0.7 337,733 + Atu3308 0.79 +2.7 337,788 - Atu3308 0.81 -0.3 337,879 + Atu3308 0.85 +0.7 337,894 + Atu3308 0.85 +0.2 337,897 - Atu3308 0.86 -0.7 337,902 - Atu3308 0.86 -0.0 337,948 + Atu3308 0.88 +0.3 338,059 + -1.2 338,080 - -2.8 338,180 - -0.7 338,210 + -0.1 338,210 + +0.3 338,218 - +0.7 338,218 - +0.2 338,239 - +0.7 338,239 - +1.1 338,262 - +0.2 338,330 + +0.6 338,353 + +0.1 338,434 + +0.2 338,567 + Atu3309 0.14 +1.1 338,705 - Atu3309 0.21 +1.5 338,738 + Atu3309 0.22 -0.0 338,807 + Atu3309 0.25 -1.5 338,944 + Atu3309 0.32 -0.3 338,993 - Atu3309 0.34 +0.1 339,018 + Atu3309 0.35 +0.4 339,018 + Atu3309 0.35 -1.5 339,030 + Atu3309 0.36 -0.6 339,108 + Atu3309 0.39 -0.3 339,109 + Atu3309 0.39 -0.5 339,117 - Atu3309 0.40 +0.7 339,117 - Atu3309 0.40 -1.4 339,127 - Atu3309 0.40 +0.7 339,188 + Atu3309 0.43 +0.4 339,204 - Atu3309 0.44 -0.5 339,224 + Atu3309 0.44 -1.4 339,224 + Atu3309 0.44 +0.1 339,224 + Atu3309 0.44 +0.2 339,232 - Atu3309 0.45 +0.7 339,232 - Atu3309 0.45 -1.4 339,245 + Atu3309 0.45 -2.5 339,315 - Atu3309 0.49 -0.1 339,345 - Atu3309 0.50 -0.3 339,399 + Atu3309 0.52 +0.2 339,399 - Atu3309 0.52 +0.4 339,423 + Atu3309 0.54 -2.2 339,457 + Atu3309 0.55 -1.0 339,484 + Atu3309 0.56 +0.8 339,561 + Atu3309 0.60 -1.5 339,561 + Atu3309 0.60 -0.3 339,569 - Atu3309 0.60 +0.3 339,608 - Atu3309 0.62 +1.3 339,638 - Atu3309 0.63 -1.5 339,956 + Atu3309 0.78 +0.5 339,979 - Atu3309 0.79 +1.5 340,022 - Atu3309 0.81 -1.9 340,053 - Atu3309 0.82 +0.5 340,137 + Atu3309 0.86 +0.1 340,160 + Atu3309 0.87 -3.2 340,235 + -0.6 340,243 - +0.5 340,243 - -1.2 340,306 + +0.2 340,331 - +0.7 340,331 - -2.1 340,538 + +1.2 340,630 + Atu8187 0.11 +1.6 340,637 + Atu8187 0.11 -2.3 340,708 - Atu8187 0.19 -2.2 340,743 + Atu8187 0.23 +0.8 340,743 + Atu8187 0.23 -1.0 340,743 + Atu8187 0.23 -0.6 340,851 + Atu8187 0.35 -0.5 340,859 - Atu8187 0.36 +0.8 340,905 + Atu8187 0.41 -1.4 340,920 - Atu8187 0.43 -0.5 341,302 + Atu8187 0.85 +0.9
Or see this region's nucleotide sequence