Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5421 and Atu5422 are separated by 9 nucleotides Atu5422 and Atu5423 are separated by 3 nucleotides
Atu5421: Atu5421 - ABC transporter membrane spanning protein (putrescine), at 415,965 to 416,948
Atu5421
Atu5422: Atu5422 - ABC transporter membrane spanning protein (putrescine), at 416,958 to 417,749
Atu5422
Atu5423: Atu5423 - ABC transporter nucleotide binding/ATPase (putrescine), at 417,753 to 418,823
Atu5423
Position (kb) 416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 415.970 kb on + strand at 415.981 kb on + strand at 415.981 kb on + strand at 416.031 kb on - strand at 416.033 kb on + strand at 416.055 kb on + strand at 416.055 kb on + strand at 416.078 kb on - strand, within Atu5421 at 416.160 kb on - strand, within Atu5421 at 416.206 kb on - strand, within Atu5421 at 416.247 kb on + strand, within Atu5421 at 416.252 kb on + strand, within Atu5421 at 416.255 kb on - strand, within Atu5421 at 416.311 kb on + strand, within Atu5421 at 416.417 kb on + strand, within Atu5421 at 416.430 kb on + strand, within Atu5421 at 416.438 kb on - strand, within Atu5421 at 416.481 kb on - strand, within Atu5421 at 416.539 kb on - strand, within Atu5421 at 416.547 kb on + strand, within Atu5421 at 416.552 kb on + strand, within Atu5421 at 416.654 kb on - strand, within Atu5421 at 416.657 kb on - strand, within Atu5421 at 416.691 kb on - strand, within Atu5421 at 416.746 kb on - strand, within Atu5421 at 416.774 kb on - strand, within Atu5421 at 416.820 kb on + strand, within Atu5421 at 416.838 kb on - strand, within Atu5421 at 416.846 kb on + strand, within Atu5421 at 416.867 kb on - strand at 416.951 kb on - strand at 416.975 kb on - strand at 417.012 kb on - strand at 417.061 kb on + strand, within Atu5422 at 417.069 kb on - strand, within Atu5422 at 417.124 kb on - strand, within Atu5422 at 417.305 kb on + strand, within Atu5422 at 417.313 kb on - strand, within Atu5422 at 417.350 kb on - strand, within Atu5422 at 417.377 kb on + strand, within Atu5422 at 417.377 kb on + strand, within Atu5422 at 417.377 kb on + strand, within Atu5422 at 417.385 kb on - strand, within Atu5422 at 417.385 kb on - strand, within Atu5422 at 417.425 kb on - strand, within Atu5422 at 417.425 kb on - strand, within Atu5422 at 417.433 kb on + strand, within Atu5422 at 417.520 kb on - strand, within Atu5422 at 417.520 kb on - strand, within Atu5422 at 417.565 kb on + strand, within Atu5422 at 417.586 kb on + strand, within Atu5422 at 417.586 kb on + strand, within Atu5422 at 417.594 kb on - strand, within Atu5422 at 417.594 kb on - strand, within Atu5422 at 417.621 kb on + strand, within Atu5422 at 417.662 kb on + strand, within Atu5422 at 417.675 kb on - strand at 417.723 kb on - strand at 417.756 kb on - strand at 417.756 kb on - strand at 417.788 kb on + strand at 417.802 kb on + strand at 417.824 kb on + strand at 417.825 kb on - strand at 417.847 kb on + strand at 417.857 kb on + strand at 417.873 kb on - strand, within Atu5423 at 417.899 kb on + strand, within Atu5423 at 417.976 kb on + strand, within Atu5423 at 417.976 kb on + strand, within Atu5423 at 418.032 kb on - strand, within Atu5423 at 418.088 kb on + strand, within Atu5423 at 418.160 kb on - strand, within Atu5423 at 418.187 kb on + strand, within Atu5423 at 418.249 kb on + strand, within Atu5423 at 418.250 kb on - strand, within Atu5423 at 418.397 kb on + strand, within Atu5423 at 418.400 kb on - strand, within Atu5423 at 418.410 kb on + strand, within Atu5423 at 418.507 kb on - strand, within Atu5423 at 418.567 kb on - strand, within Atu5423 at 418.567 kb on - strand, within Atu5423 at 418.595 kb on + strand, within Atu5423 at 418.603 kb on - strand, within Atu5423 at 418.613 kb on - strand, within Atu5423 at 418.673 kb on + strand, within Atu5423 at 418.673 kb on + strand, within Atu5423 at 418.681 kb on - strand, within Atu5423
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 415,970 + +0.0 415,981 + +0.0 415,981 + +0.3 416,031 - -0.8 416,033 + -0.1 416,055 + -0.4 416,055 + -0.3 416,078 - Atu5421 0.11 +1.3 416,160 - Atu5421 0.20 -1.7 416,206 - Atu5421 0.24 +0.3 416,247 + Atu5421 0.29 +2.3 416,252 + Atu5421 0.29 +1.0 416,255 - Atu5421 0.29 +1.4 416,311 + Atu5421 0.35 +0.4 416,417 + Atu5421 0.46 -1.5 416,430 + Atu5421 0.47 +0.6 416,438 - Atu5421 0.48 +0.0 416,481 - Atu5421 0.52 +1.4 416,539 - Atu5421 0.58 -1.2 416,547 + Atu5421 0.59 -0.6 416,552 + Atu5421 0.60 +0.0 416,654 - Atu5421 0.70 -2.2 416,657 - Atu5421 0.70 -0.8 416,691 - Atu5421 0.74 -2.0 416,746 - Atu5421 0.79 -0.1 416,774 - Atu5421 0.82 -0.0 416,820 + Atu5421 0.87 +2.0 416,838 - Atu5421 0.89 +0.4 416,846 + Atu5421 0.90 +1.9 416,867 - +0.5 416,951 - -0.1 416,975 - -0.1 417,012 - -1.4 417,061 + Atu5422 0.13 -0.4 417,069 - Atu5422 0.14 -0.0 417,124 - Atu5422 0.21 +0.1 417,305 + Atu5422 0.44 +0.3 417,313 - Atu5422 0.45 -1.0 417,350 - Atu5422 0.49 -0.4 417,377 + Atu5422 0.53 -0.7 417,377 + Atu5422 0.53 -0.6 417,377 + Atu5422 0.53 -1.3 417,385 - Atu5422 0.54 +0.0 417,385 - Atu5422 0.54 -1.5 417,425 - Atu5422 0.59 -1.5 417,425 - Atu5422 0.59 +1.3 417,433 + Atu5422 0.60 +0.4 417,520 - Atu5422 0.71 -2.8 417,520 - Atu5422 0.71 -1.6 417,565 + Atu5422 0.77 -1.8 417,586 + Atu5422 0.79 -0.9 417,586 + Atu5422 0.79 -1.6 417,594 - Atu5422 0.80 -2.8 417,594 - Atu5422 0.80 -1.4 417,621 + Atu5422 0.84 -1.0 417,662 + Atu5422 0.89 +1.8 417,675 - +0.3 417,723 - -0.2 417,756 - -0.1 417,756 - +0.1 417,788 + +0.4 417,802 + +0.0 417,824 + +0.6 417,825 - +0.6 417,847 + -0.1 417,857 + -0.6 417,873 - Atu5423 0.11 -0.2 417,899 + Atu5423 0.14 -0.5 417,976 + Atu5423 0.21 +0.7 417,976 + Atu5423 0.21 +2.6 418,032 - Atu5423 0.26 +0.4 418,088 + Atu5423 0.31 +1.5 418,160 - Atu5423 0.38 -0.4 418,187 + Atu5423 0.41 -0.2 418,249 + Atu5423 0.46 -1.5 418,250 - Atu5423 0.46 -3.0 418,397 + Atu5423 0.60 +0.2 418,400 - Atu5423 0.60 +0.6 418,410 + Atu5423 0.61 +0.1 418,507 - Atu5423 0.70 -0.1 418,567 - Atu5423 0.76 -1.2 418,567 - Atu5423 0.76 +3.4 418,595 + Atu5423 0.79 +1.0 418,603 - Atu5423 0.79 -0.7 418,613 - Atu5423 0.80 +0.5 418,673 + Atu5423 0.86 +0.5 418,673 + Atu5423 0.86 -0.4 418,681 - Atu5423 0.87 +1.4
Or see this region's nucleotide sequence