Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5157 and Atu5158 are separated by 178 nucleotides Atu5158 and Atu5159 are separated by 334 nucleotides Atu5159 and Atu5160 are separated by 360 nucleotides Atu5160 and Atu5161 are separated by 93 nucleotides
Atu5157: Atu5157 - hypothetical protein, at 157,558 to 157,887
Atu5157
Atu5158: Atu5158 - hypothetical protein, at 158,066 to 158,410
Atu5158
Atu5159: Atu5159 - hypothetical protein, at 158,745 to 159,149
Atu5159
Atu5160: Atu5160 - transcriptional regulator protein, at 159,510 to 159,872
Atu5160
Atu5161: Atu5161 - hypothetical protein, at 159,966 to 160,505
Atu5161
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 157.764 kb on + strand, within Atu5157 at 157.831 kb on - strand, within Atu5157 at 157.959 kb on - strand at 158.046 kb on - strand at 158.097 kb on + strand at 158.127 kb on + strand, within Atu5158 at 158.156 kb on - strand, within Atu5158 at 158.236 kb on + strand, within Atu5158 at 158.265 kb on - strand, within Atu5158 at 158.271 kb on + strand, within Atu5158 at 158.281 kb on + strand, within Atu5158 at 158.307 kb on + strand, within Atu5158 at 158.362 kb on - strand, within Atu5158 at 158.456 kb on + strand at 158.486 kb on - strand at 158.491 kb on - strand at 158.507 kb on - strand at 158.557 kb on + strand at 158.557 kb on + strand at 158.565 kb on - strand at 158.567 kb on + strand at 158.580 kb on - strand at 158.657 kb on - strand at 158.657 kb on - strand at 158.720 kb on + strand at 158.777 kb on + strand at 158.797 kb on + strand, within Atu5159 at 158.805 kb on - strand, within Atu5159 at 158.853 kb on - strand, within Atu5159 at 158.858 kb on + strand, within Atu5159 at 158.893 kb on + strand, within Atu5159 at 159.016 kb on - strand, within Atu5159 at 159.102 kb on - strand, within Atu5159 at 159.148 kb on + strand at 159.151 kb on - strand at 159.162 kb on + strand at 159.178 kb on - strand at 159.179 kb on - strand at 159.262 kb on + strand at 159.314 kb on + strand at 159.317 kb on - strand at 159.322 kb on - strand at 159.354 kb on + strand at 159.359 kb on - strand at 159.361 kb on + strand at 159.361 kb on + strand at 159.362 kb on - strand at 159.391 kb on - strand at 159.455 kb on - strand at 159.486 kb on - strand at 159.486 kb on - strand at 159.496 kb on - strand at 159.543 kb on - strand at 159.655 kb on - strand, within Atu5160 at 159.766 kb on + strand, within Atu5160 at 159.833 kb on + strand, within Atu5160 at 159.833 kb on + strand, within Atu5160 at 159.842 kb on - strand at 159.953 kb on - strand at 160.006 kb on + strand at 160.066 kb on + strand, within Atu5161 at 160.074 kb on - strand, within Atu5161 at 160.079 kb on - strand, within Atu5161 at 160.096 kb on + strand, within Atu5161 at 160.136 kb on + strand, within Atu5161
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 157,764 + Atu5157 0.62 +0.3 157,831 - Atu5157 0.83 -3.1 157,959 - -1.8 158,046 - +2.0 158,097 + +0.1 158,127 + Atu5158 0.18 -1.3 158,156 - Atu5158 0.26 +2.1 158,236 + Atu5158 0.49 -1.0 158,265 - Atu5158 0.58 -0.3 158,271 + Atu5158 0.59 -0.3 158,281 + Atu5158 0.62 -1.5 158,307 + Atu5158 0.70 -0.0 158,362 - Atu5158 0.86 -1.0 158,456 + -1.5 158,486 - -0.0 158,491 - -0.0 158,507 - -0.8 158,557 + +1.0 158,557 + +2.2 158,565 - -2.9 158,567 + +1.2 158,580 - -0.5 158,657 - -1.4 158,657 - +1.0 158,720 + +0.8 158,777 + -0.8 158,797 + Atu5159 0.13 -0.2 158,805 - Atu5159 0.15 -1.9 158,853 - Atu5159 0.27 +1.3 158,858 + Atu5159 0.28 -0.6 158,893 + Atu5159 0.37 -2.4 159,016 - Atu5159 0.67 +0.5 159,102 - Atu5159 0.88 -1.1 159,148 + -0.8 159,151 - -0.7 159,162 + -0.6 159,178 - +0.6 159,179 - -2.4 159,262 + +0.9 159,314 + +1.0 159,317 - +0.3 159,322 - -2.0 159,354 + -3.6 159,359 - -1.0 159,361 + +1.5 159,361 + -0.4 159,362 - -2.8 159,391 - -0.7 159,455 - -0.1 159,486 - -1.0 159,486 - +0.6 159,496 - +0.4 159,543 - -0.5 159,655 - Atu5160 0.40 +1.4 159,766 + Atu5160 0.71 -3.7 159,833 + Atu5160 0.89 -0.1 159,833 + Atu5160 0.89 -1.2 159,842 - +0.4 159,953 - -0.6 160,006 + +0.2 160,066 + Atu5161 0.19 +0.6 160,074 - Atu5161 0.20 -0.1 160,079 - Atu5161 0.21 +1.5 160,096 + Atu5161 0.24 +0.4 160,136 + Atu5161 0.31 +1.2
Or see this region's nucleotide sequence