Strain Fitness in Agrobacterium fabrum C58 around Atu4050

Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4049 and Atu4050 are separated by 62 nucleotidesAtu4050 and Atu4051 are separated by 84 nucleotides Atu4049: Atu4049 - exopolysaccharide polymerization/transport protein, at 1,164,770 to 1,167,163 Atu4049 Atu4050: Atu4050 - UTP-glucose-1-phosphate uridylyltransferase, at 1,167,226 to 1,168,131 Atu4050 Atu4051: Atu4051 - succinoglycan biosynthesis glycosyltransferase, at 1,168,216 to 1,169,196 Atu4051 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1167.156 kb on - strandat 1167.599 kb on - strand, within Atu4050at 1167.710 kb on + strand, within Atu4050at 1167.718 kb on - strand, within Atu4050at 1167.795 kb on - strand, within Atu4050at 1168.158 kb on - strandat 1168.186 kb on - strandat 1168.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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1,167,156 - -2.0
1,167,599 - Atu4050 0.41 -0.8
1,167,710 + Atu4050 0.53 -1.3
1,167,718 - Atu4050 0.54 +0.1
1,167,795 - Atu4050 0.63 -3.1
1,168,158 - +0.5
1,168,186 - -0.5
1,168,246 - +3.9

Or see this region's nucleotide sequence