Strain Fitness in Agrobacterium fabrum C58 around Atu3974

Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
1,078,438	-				+5.1
1,078,541	+				+0.7
1,078,549	-				+0.8
1,078,639	-		Atu3973	0.13	-2.4
1,078,664	+		Atu3973	0.17	-1.7
1,078,694	-		Atu3973	0.21	-0.6
1,078,696	+		Atu3973	0.21	+0.6
1,078,799	-		Atu3973	0.36	+0.7
1,079,158	+		Atu3973	0.86	+1.8
1,079,161	-		Atu3973	0.87	+0.8
1,079,166	-		Atu3973	0.87	+0.9
1,079,166	-		Atu3973	0.87	-1.8
1,079,184	+				-1.0
1,079,184	+				+0.1
1,079,191	+				+0.5
1,079,373	+				-1.1
1,079,462	-				+1.3
1,079,462	-				+0.3
1,079,497	-				+0.8
1,079,563	-				+0.9
1,079,589	+				+0.6
1,079,728	+				+1.3
1,079,747	+				-0.1
1,079,848	+				-1.0
1,079,848	+				+0.3
1,079,896	+		Atu3974	0.10	+0.3
1,079,973	-		Atu3974	0.12	-0.3
1,079,983	-		Atu3974	0.12	+1.8
1,079,987	+		Atu3974	0.12	+0.8
1,080,012	+		Atu3974	0.12	+0.6
1,080,017	+		Atu3974	0.13	-1.5
1,080,025	-		Atu3974	0.13	+0.6
1,080,098	-		Atu3974	0.14	-0.5
1,080,105	+		Atu3974	0.14	+1.6
1,080,182	-		Atu3974	0.16	-0.9
1,080,194	-		Atu3974	0.16	+0.1
1,080,205	-		Atu3974	0.16	-0.5
1,080,253	-		Atu3974	0.17	+1.3
1,080,254	-		Atu3974	0.17	+0.4
1,080,287	+		Atu3974	0.18	-0.3
1,080,295	-		Atu3974	0.18	+1.1
1,080,324	+		Atu3974	0.18	-0.0
1,080,365	-		Atu3974	0.19	-0.0
1,080,384	-		Atu3974	0.20	-0.4
1,080,397	+		Atu3974	0.20	+0.4
1,080,405	+		Atu3974	0.20	+3.3
1,080,414	+		Atu3974	0.20	+0.7
1,080,414	-		Atu3974	0.20	-0.2
1,080,415	-		Atu3974	0.20	+0.5
1,080,448	+		Atu3974	0.21	+0.5
1,080,455	+		Atu3974	0.21	-1.6
1,080,463	-		Atu3974	0.21	-0.6
1,080,485	-		Atu3974	0.22	+0.6
1,080,485	-		Atu3974	0.22	+0.5
1,080,616	+		Atu3974	0.24	-1.7
1,080,647	+		Atu3974	0.25	+0.4
1,080,647	+		Atu3974	0.25	-0.2
1,080,655	-		Atu3974	0.25	-1.7
1,080,655	-		Atu3974	0.25	-0.5
1,080,678	+		Atu3974	0.25	-1.9
1,080,749	-		Atu3974	0.27	+0.2
1,080,784	+		Atu3974	0.27	+2.9
1,080,784	+		Atu3974	0.27	-0.3
1,080,792	-		Atu3974	0.28	+1.0
1,080,792	-		Atu3974	0.28	+0.9
1,080,840	-		Atu3974	0.28	+0.2
1,080,840	-		Atu3974	0.28	+0.3
1,080,846	+		Atu3974	0.29	-0.4
1,080,902	-		Atu3974	0.30	+0.3
1,080,919	-		Atu3974	0.30	+0.2
1,080,970	-		Atu3974	0.31	-1.0
1,080,981	+		Atu3974	0.31	+0.0
1,080,991	-		Atu3974	0.31	+0.2
1,081,013	-		Atu3974	0.32	+1.2
1,081,055	+		Atu3974	0.33	-0.5
1,081,055	+		Atu3974	0.33	+0.4
1,081,063	-		Atu3974	0.33	-0.2
1,081,063	-		Atu3974	0.33	-0.2
1,081,070	-		Atu3974	0.33	+2.1
1,081,077	+		Atu3974	0.33	-0.1
1,081,104	-		Atu3974	0.34	-2.5
1,081,116	-		Atu3974	0.34	-1.4
1,081,116	-		Atu3974	0.34	-0.3
1,081,182	-		Atu3974	0.35	-0.3
1,081,192	+		Atu3974	0.35	-0.1
1,081,219	-		Atu3974	0.36	+0.4
1,081,219	-		Atu3974	0.36	-0.5
1,081,230	+		Atu3974	0.36	+0.4
1,081,247	+		Atu3974	0.36	-2.5
1,081,255	-		Atu3974	0.36	-0.2
1,081,271	+		Atu3974	0.37	+0.3
1,081,317	+		Atu3974	0.38	-2.5
1,081,317	+		Atu3974	0.38	-0.6
1,081,319	+		Atu3974	0.38	-0.0
1,081,339	+		Atu3974	0.38	-0.4
1,081,347	-		Atu3974	0.38	+1.4
1,081,440	-		Atu3974	0.40	-1.4
1,081,470	+		Atu3974	0.41	+0.3
1,081,478	-		Atu3974	0.41	-2.1
1,081,488	-		Atu3974	0.41	-1.7
1,081,507	-		Atu3974	0.41	+0.4
1,081,517	-		Atu3974	0.41	-2.5
1,081,547	+		Atu3974	0.42	-0.2
1,081,547	+		Atu3974	0.42	-1.2
1,081,554	+		Atu3974	0.42	+0.2
1,081,555	-		Atu3974	0.42	+1.9
1,081,564	+		Atu3974	0.42	+2.0
1,081,600	+		Atu3974	0.43	-0.4
1,081,608	-		Atu3974	0.43	-0.0
1,081,643	+		Atu3974	0.44	+0.7
1,081,646	-		Atu3974	0.44	-3.1
1,081,646	-		Atu3974	0.44	-0.5
1,081,653	+		Atu3974	0.44	+0.8
1,081,691	+		Atu3974	0.45	+1.5
1,081,715	+		Atu3974	0.45	-2.5
1,081,715	+		Atu3974	0.45	+1.2
1,081,720	+		Atu3974	0.45	+0.2
1,081,723	-		Atu3974	0.45	+2.3
1,081,733	-		Atu3974	0.46	+1.1
1,081,733	-		Atu3974	0.46	-1.1
1,081,768	+		Atu3974	0.46	-0.5
1,081,776	-		Atu3974	0.46	-0.4
1,081,823	+		Atu3974	0.47	+0.2
1,081,826	-		Atu3974	0.47	+1.4
1,081,840	+		Atu3974	0.48	+1.1
1,081,848	-		Atu3974	0.48	+0.0
1,081,848	-		Atu3974	0.48	-0.1
1,081,859	+		Atu3974	0.48	-0.2
1,081,859	+		Atu3974	0.48	+0.9
1,081,859	+		Atu3974	0.48	+1.4
1,081,867	-		Atu3974	0.48	+0.5
1,081,886	-		Atu3974	0.49	-0.7
1,081,907	+		Atu3974	0.49	-2.4
1,081,917	+		Atu3974	0.49	-1.4
1,081,917	+		Atu3974	0.49	+1.5
1,081,917	+		Atu3974	0.49	-0.4
1,081,917	+		Atu3974	0.49	+1.8
1,081,920	-		Atu3974	0.49	-0.2
1,081,925	-		Atu3974	0.49	-0.4
1,081,925	-		Atu3974	0.49	+0.3
1,081,925	-		Atu3974	0.49	-0.8
1,081,925	-		Atu3974	0.49	+3.1
1,081,925	-		Atu3974	0.49	-2.2
1,081,925	-		Atu3974	0.49	+1.3
1,081,968	-		Atu3974	0.50	+1.8
1,081,983	-		Atu3974	0.50	+0.2
1,081,983	-		Atu3974	0.50	-0.3
1,081,990	-		Atu3974	0.51	-0.5
1,082,004	-		Atu3974	0.51	+1.2
1,082,076	-		Atu3974	0.52	+0.8
1,082,080	+		Atu3974	0.52	-1.2
1,082,088	-		Atu3974	0.52	+1.4
1,082,088	-		Atu3974	0.52	+1.5
1,082,111	+		Atu3974	0.53	-1.2
1,082,119	-		Atu3974	0.53	+2.4
1,082,119	-		Atu3974	0.53	+0.8
1,082,177	-		Atu3974	0.54	+0.0
1,082,248	+		Atu3974	0.56	+1.0
1,082,256	-		Atu3974	0.56	+1.1
1,082,256	-		Atu3974	0.56	+1.6
1,082,304	-		Atu3974	0.57	+0.3
1,082,351	+		Atu3974	0.58	+1.1
1,082,351	+		Atu3974	0.58	+0.8
1,082,351	+		Atu3974	0.58	+1.3
1,082,351	+		Atu3974	0.58	-0.5
1,082,358	+		Atu3974	0.58	+0.8
1,082,359	-		Atu3974	0.58	+0.2
1,082,359	-		Atu3974	0.58	+0.8
1,082,359	-		Atu3974	0.58	-1.1
1,082,373	+		Atu3974	0.58	-0.8
1,082,375	+		Atu3974	0.58	-3.7
1,082,381	-		Atu3974	0.58	+1.8
1,082,381	-		Atu3974	0.58	+1.8
1,082,404	+		Atu3974	0.59	-0.6
1,082,435	+		Atu3974	0.59	+0.3
1,082,443	-		Atu3974	0.59	+0.9
1,082,501	-		Atu3974	0.60	+0.1
1,082,522	-		Atu3974	0.61	+2.2
1,082,536	+		Atu3974	0.61	-0.6
1,082,541	+		Atu3974	0.61	+0.5
1,082,549	-		Atu3974	0.61	+0.2
1,082,549	-		Atu3974	0.61	-0.3
1,082,573	-		Atu3974	0.62	-1.7
1,082,581	+		Atu3974	0.62	-0.6
1,082,728	+		Atu3974	0.65	-2.0
1,082,736	-		Atu3974	0.65	-2.9
1,082,762	+		Atu3974	0.65	+0.2
1,082,762	+		Atu3974	0.65	+0.2
1,082,771	+		Atu3974	0.66	-3.7
1,082,776	+		Atu3974	0.66	-0.2
1,082,783	+		Atu3974	0.66	+2.3
1,082,807	-		Atu3974	0.66	+0.8
1,082,812	-		Atu3974	0.66	+0.7
1,082,843	-		Atu3974	0.67	+0.4
1,082,876	+		Atu3974	0.68	+0.1
1,082,883	+		Atu3974	0.68	+0.3
1,082,891	-		Atu3974	0.68	+1.2
1,082,972	+		Atu3974	0.69	+0.1
1,082,982	+		Atu3974	0.70	+2.8
1,083,061	+		Atu3974	0.71	+1.2
1,083,061	+		Atu3974	0.71	-1.6
1,083,069	-		Atu3974	0.71	+0.6
1,083,069	-		Atu3974	0.71	-0.7
1,083,133	+		Atu3974	0.73	+1.2
1,083,172	-		Atu3974	0.73	+2.5
1,083,196	-		Atu3974	0.74	+0.6
1,083,220	-		Atu3974	0.74	+3.9
1,083,225	-		Atu3974	0.74	-1.7
1,083,225	-		Atu3974	0.74	+2.8
1,083,314	-		Atu3974	0.76	+0.4
1,083,315	+		Atu3974	0.76	-0.1
1,083,323	-		Atu3974	0.76	+0.5
1,083,333	-		Atu3974	0.76	-1.2
1,083,339	+		Atu3974	0.77	-0.7
1,083,339	+		Atu3974	0.77	-0.5
1,083,402	+		Atu3974	0.78	-3.3
1,083,402	+		Atu3974	0.78	+1.8
1,083,404	+		Atu3974	0.78	-1.9
1,083,404	+		Atu3974	0.78	+1.1
1,083,410	-		Atu3974	0.78	+0.1
1,083,435	+		Atu3974	0.78	+0.8
1,083,459	+		Atu3974	0.79	+0.7
1,083,459	+		Atu3974	0.79	-0.8
1,083,467	-		Atu3974	0.79	-1.6
1,083,467	-		Atu3974	0.79	-0.3
1,083,467	-		Atu3974	0.79	-2.1
1,083,477	-		Atu3974	0.79	-1.9
1,083,491	-		Atu3974	0.79	-2.3
1,083,495	+		Atu3974	0.80	-3.9
1,083,503	-		Atu3974	0.80	+0.8
1,083,517	+		Atu3974	0.80	+0.6
1,083,531	+		Atu3974	0.80	+0.3
1,083,541	+		Atu3974	0.80	+0.5
1,083,549	-		Atu3974	0.81	+1.9
1,083,549	-		Atu3974	0.81	-0.9
1,083,557	+		Atu3974	0.81	-2.9
1,083,565	-		Atu3974	0.81	+0.8
1,083,565	-		Atu3974	0.81	+1.5
1,083,618	+		Atu3974	0.82	-1.0
1,083,621	-		Atu3974	0.82	+0.1
1,083,626	-		Atu3974	0.82	-1.2
1,083,675	+		Atu3974	0.83	+0.5
1,083,693	+		Atu3974	0.83	+0.6
1,083,728	+		Atu3974	0.84	-0.4
1,083,736	-		Atu3974	0.84	-1.6
1,083,738	+		Atu3974	0.84	+0.6
1,083,738	+		Atu3974	0.84	-1.5
1,083,764	+		Atu3974	0.85	-0.2
1,083,772	-		Atu3974	0.85	+0.5
1,083,860	+		Atu3974	0.87	+1.6
1,083,870	+		Atu3974	0.87	+0.4
1,083,878	-		Atu3974	0.87	+0.4
1,083,933	-		Atu3974	0.88	-0.1
1,083,973	+		Atu3974	0.89	+0.2
1,083,980	+		Atu3974	0.89	-2.6
1,083,987	-		Atu3974	0.89	-0.4
1,083,988	-		Atu3974	0.89	+0.6
1,083,988	-		Atu3974	0.89	-0.3
1,084,019	+		Atu3974	0.90	+2.0
1,084,021	+		Atu3974	0.90	-3.2
1,084,034	-		Atu3974	0.90	+1.5
1,084,052	+				-3.3
1,084,067	-				+1.3
1,084,089	-				+0.6
1,084,093	+				+0.3
1,084,101	-				+1.2
1,084,146	+				-2.8
1,084,165	+				+0.5
1,084,165	+				+1.4
1,084,173	-				-1.1
1,084,196	+				-0.9
1,084,228	-				-1.2
1,084,283	-				-0.4
1,084,285	+				-2.6
1,084,323	+				-0.2
1,084,389	-				-3.7
1,084,437	-				-0.4
1,084,453	+				-1.0
1,084,475	+				-0.7
1,084,483	-				-0.2
1,084,506	+				+0.8
1,084,523	-				+0.6
1,084,581	+				+0.8
1,084,609	+				-0.3
1,084,689	-				-2.4
1,084,741	-				+0.9
1,084,844	+				+0.8
1,084,854	-				+0.1
1,084,892	+		Atu3975	0.10	-1.5
1,084,892	+		Atu3975	0.10	+1.2
1,084,892	+		Atu3975	0.10	+0.4
1,084,892	+		Atu3975	0.10	+0.9
1,084,892	+		Atu3975	0.10	-0.3
1,084,900	-		Atu3975	0.11	-1.8
1,084,905	+		Atu3975	0.11	+0.9
1,084,910	+		Atu3975	0.12	-0.7
1,084,946	-		Atu3975	0.15	+0.9
1,084,974	-		Atu3975	0.17	-1.9
1,084,999	+		Atu3975	0.19	+0.0
1,085,033	-		Atu3975	0.22	-0.7
1,085,142	-		Atu3975	0.32	-1.6
1,085,183	-		Atu3975	0.35	+2.2
1,085,277	-		Atu3975	0.43	-0.6
1,085,305	-		Atu3975	0.46	-0.1
1,085,305	-		Atu3975	0.46	-3.0
1,085,446	+		Atu3975	0.58	-0.0
1,085,462	+		Atu3975	0.59	-2.2
1,085,498	-		Atu3975	0.63	-2.7
1,085,501	+		Atu3975	0.63	-2.5
1,085,520	+		Atu3975	0.64	+0.3
1,085,555	+		Atu3975	0.67	-0.6