Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3817 and Atu3818 are separated by 129 nucleotides Atu3818 and Atu3819 overlap by 4 nucleotides Atu3819 and Atu3820 overlap by 4 nucleotides
Atu3817: Atu3817 - dehydratase, at 912,674 to 914,185
Atu3817
Atu3818: Atu3818 - ribose ABC transporter ATPase, at 914,315 to 915,814
Atu3818
Atu3819: Atu3819 - ribose ABC transporter permease, at 915,811 to 916,809
Atu3819
Atu3820: Atu3820 - ribose ABC transporter permease, at 916,806 to 917,771
Atu3820
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 913.322 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.607 kb on + strand, within Atu3817 at 913.671 kb on + strand, within Atu3817 at 913.678 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.894 kb on + strand, within Atu3817 at 913.934 kb on - strand, within Atu3817 at 913.965 kb on - strand, within Atu3817 at 913.980 kb on + strand, within Atu3817 at 914.023 kb on - strand, within Atu3817 at 914.232 kb on - strand at 914.319 kb on - strand at 914.370 kb on + strand at 914.402 kb on + strand at 914.402 kb on + strand at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.533 kb on - strand, within Atu3818 at 914.536 kb on + strand, within Atu3818 at 914.600 kb on + strand, within Atu3818 at 914.610 kb on - strand, within Atu3818 at 914.729 kb on - strand, within Atu3818 at 914.776 kb on + strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.952 kb on + strand, within Atu3818 at 914.960 kb on - strand, within Atu3818 at 915.024 kb on + strand, within Atu3818 at 915.089 kb on - strand, within Atu3818 at 915.267 kb on - strand, within Atu3818 at 915.267 kb on - strand, within Atu3818 at 915.335 kb on + strand, within Atu3818 at 915.352 kb on + strand, within Atu3818 at 915.352 kb on + strand, within Atu3818 at 915.380 kb on - strand, within Atu3818 at 915.395 kb on + strand, within Atu3818 at 915.403 kb on - strand, within Atu3818 at 915.413 kb on - strand, within Atu3818 at 915.483 kb on + strand, within Atu3818 at 915.535 kb on + strand, within Atu3818 at 915.546 kb on + strand, within Atu3818 at 915.554 kb on - strand, within Atu3818 at 915.566 kb on - strand, within Atu3818 at 915.602 kb on - strand, within Atu3818 at 915.649 kb on - strand, within Atu3818 at 915.685 kb on + strand at 915.723 kb on + strand at 915.739 kb on - strand at 915.840 kb on + strand at 916.024 kb on + strand, within Atu3819 at 916.132 kb on + strand, within Atu3819 at 916.140 kb on - strand, within Atu3819 at 916.208 kb on + strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.426 kb on + strand, within Atu3819 at 916.458 kb on + strand, within Atu3819 at 916.466 kb on - strand, within Atu3819 at 916.490 kb on - strand, within Atu3819 at 916.537 kb on - strand, within Atu3819 at 916.542 kb on - strand, within Atu3819 at 916.544 kb on + strand, within Atu3819 at 916.567 kb on - strand, within Atu3819 at 916.572 kb on + strand, within Atu3819 at 916.671 kb on + strand, within Atu3819 at 916.705 kb on - strand, within Atu3819 at 916.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 913,322 - Atu3817 0.43 -0.4 913,460 - Atu3817 0.52 +0.2 913,460 - Atu3817 0.52 -1.8 913,607 + Atu3817 0.62 -0.5 913,671 + Atu3817 0.66 -0.8 913,678 - Atu3817 0.66 -2.0 913,816 - Atu3817 0.76 +0.8 913,816 - Atu3817 0.76 +0.3 913,894 + Atu3817 0.81 +1.1 913,934 - Atu3817 0.83 -0.6 913,965 - Atu3817 0.85 +0.9 913,980 + Atu3817 0.86 -1.6 914,023 - Atu3817 0.89 -1.5 914,232 - +0.2 914,319 - +0.0 914,370 + -0.1 914,402 + -1.5 914,402 + +0.5 914,481 + Atu3818 0.11 +0.5 914,481 + Atu3818 0.11 -0.1 914,481 + Atu3818 0.11 -1.5 914,481 + Atu3818 0.11 -0.7 914,533 - Atu3818 0.15 +0.4 914,536 + Atu3818 0.15 -0.4 914,600 + Atu3818 0.19 -2.1 914,610 - Atu3818 0.20 +0.8 914,729 - Atu3818 0.28 +0.2 914,776 + Atu3818 0.31 -1.2 914,834 - Atu3818 0.35 -0.3 914,834 - Atu3818 0.35 +0.8 914,952 + Atu3818 0.42 +0.6 914,960 - Atu3818 0.43 +0.7 915,024 + Atu3818 0.47 +0.2 915,089 - Atu3818 0.52 +0.5 915,267 - Atu3818 0.63 -3.2 915,267 - Atu3818 0.63 +2.7 915,335 + Atu3818 0.68 +0.8 915,352 + Atu3818 0.69 +0.8 915,352 + Atu3818 0.69 +0.0 915,380 - Atu3818 0.71 -0.8 915,395 + Atu3818 0.72 +0.5 915,403 - Atu3818 0.73 +4.1 915,413 - Atu3818 0.73 +1.2 915,483 + Atu3818 0.78 +0.9 915,535 + Atu3818 0.81 -1.0 915,546 + Atu3818 0.82 +0.3 915,554 - Atu3818 0.83 +0.4 915,566 - Atu3818 0.83 -0.7 915,602 - Atu3818 0.86 -0.2 915,649 - Atu3818 0.89 -2.6 915,685 + +1.2 915,723 + +0.5 915,739 - +0.3 915,840 + -2.5 916,024 + Atu3819 0.21 -1.8 916,132 + Atu3819 0.32 +2.7 916,140 - Atu3819 0.33 +3.7 916,208 + Atu3819 0.40 -0.9 916,406 - Atu3819 0.60 -1.5 916,406 - Atu3819 0.60 +0.4 916,426 + Atu3819 0.62 -1.8 916,458 + Atu3819 0.65 -0.5 916,466 - Atu3819 0.66 +1.0 916,490 - Atu3819 0.68 +0.2 916,537 - Atu3819 0.73 +0.9 916,542 - Atu3819 0.73 -0.6 916,544 + Atu3819 0.73 +0.9 916,567 - Atu3819 0.76 +0.3 916,572 + Atu3819 0.76 -0.4 916,671 + Atu3819 0.86 +0.4 916,705 - Atu3819 0.89 -0.2 916,760 + -0.3
Or see this region's nucleotide sequence