Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3128 and Atu3129 are separated by 8 nucleotides Atu3129 and Atu3130 are separated by 112 nucleotides
Atu3128: Atu3128 - di-trans,poly-cis-decaprenylcistransferase, at 134,987 to 136,084
Atu3128
Atu3129: Atu3129 - polygalacturonase-like protein, at 136,093 to 137,646
Atu3129
Atu3130: Atu3130 - sugar ABC transporter substrate-binding protein, at 137,759 to 139,027
Atu3130
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.169 kb on - strand, within Atu3128 at 135.216 kb on + strand, within Atu3128 at 135.217 kb on - strand, within Atu3128 at 135.253 kb on + strand, within Atu3128 at 135.275 kb on - strand, within Atu3128 at 135.389 kb on + strand, within Atu3128 at 135.427 kb on + strand, within Atu3128 at 135.434 kb on + strand, within Atu3128 at 135.541 kb on + strand, within Atu3128 at 135.637 kb on + strand, within Atu3128 at 135.645 kb on - strand, within Atu3128 at 135.702 kb on + strand, within Atu3128 at 135.707 kb on + strand, within Atu3128 at 135.710 kb on - strand, within Atu3128 at 135.715 kb on - strand, within Atu3128 at 135.883 kb on + strand, within Atu3128 at 135.891 kb on - strand, within Atu3128 at 135.988 kb on - strand at 135.990 kb on - strand at 136.009 kb on + strand at 136.127 kb on + strand at 136.132 kb on - strand at 136.167 kb on + strand at 136.243 kb on - strand at 136.320 kb on - strand, within Atu3129 at 136.350 kb on + strand, within Atu3129 at 136.416 kb on - strand, within Atu3129 at 136.467 kb on + strand, within Atu3129 at 136.671 kb on + strand, within Atu3129 at 136.679 kb on - strand, within Atu3129 at 136.755 kb on - strand, within Atu3129 at 136.825 kb on - strand, within Atu3129 at 136.869 kb on - strand, within Atu3129 at 136.970 kb on - strand, within Atu3129 at 137.045 kb on - strand, within Atu3129 at 137.196 kb on + strand, within Atu3129 at 137.215 kb on - strand, within Atu3129 at 137.239 kb on - strand, within Atu3129 at 137.400 kb on + strand, within Atu3129 at 137.408 kb on - strand, within Atu3129 at 137.434 kb on + strand, within Atu3129 at 137.442 kb on - strand, within Atu3129 at 137.601 kb on + strand at 137.601 kb on + strand at 137.642 kb on + strand at 137.702 kb on - strand at 137.830 kb on + strand at 137.969 kb on - strand, within Atu3130 at 137.985 kb on + strand, within Atu3130 at 138.081 kb on - strand, within Atu3130 at 138.253 kb on + strand, within Atu3130 at 138.261 kb on - strand, within Atu3130 at 138.338 kb on - strand, within Atu3130 at 138.368 kb on - strand, within Atu3130 at 138.488 kb on + strand, within Atu3130 at 138.493 kb on - strand, within Atu3130 at 138.642 kb on + strand, within Atu3130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 135,169 - Atu3128 0.17 +0.3 135,216 + Atu3128 0.21 +2.6 135,217 - Atu3128 0.21 -1.6 135,253 + Atu3128 0.24 +0.3 135,275 - Atu3128 0.26 +0.1 135,389 + Atu3128 0.37 +0.5 135,427 + Atu3128 0.40 -0.2 135,434 + Atu3128 0.41 +0.5 135,541 + Atu3128 0.50 +1.0 135,637 + Atu3128 0.59 -0.8 135,645 - Atu3128 0.60 +1.1 135,702 + Atu3128 0.65 -2.3 135,707 + Atu3128 0.66 +0.2 135,710 - Atu3128 0.66 -3.6 135,715 - Atu3128 0.66 +0.0 135,883 + Atu3128 0.82 -0.1 135,891 - Atu3128 0.82 -1.3 135,988 - +0.2 135,990 - +0.1 136,009 + -0.1 136,127 + +0.1 136,132 - -0.3 136,167 + -1.1 136,243 - -0.9 136,320 - Atu3129 0.15 -2.3 136,350 + Atu3129 0.17 -1.0 136,416 - Atu3129 0.21 +1.2 136,467 + Atu3129 0.24 +0.4 136,671 + Atu3129 0.37 -1.3 136,679 - Atu3129 0.38 -1.2 136,755 - Atu3129 0.43 +0.7 136,825 - Atu3129 0.47 +0.2 136,869 - Atu3129 0.50 -0.4 136,970 - Atu3129 0.56 -3.4 137,045 - Atu3129 0.61 -0.8 137,196 + Atu3129 0.71 -1.2 137,215 - Atu3129 0.72 +0.2 137,239 - Atu3129 0.74 +2.1 137,400 + Atu3129 0.84 +0.7 137,408 - Atu3129 0.85 -0.8 137,434 + Atu3129 0.86 +0.1 137,442 - Atu3129 0.87 -0.0 137,601 + -1.1 137,601 + +2.1 137,642 + -2.1 137,702 - -0.6 137,830 + -0.7 137,969 - Atu3130 0.17 +0.3 137,985 + Atu3130 0.18 -1.8 138,081 - Atu3130 0.25 +0.9 138,253 + Atu3130 0.39 -1.1 138,261 - Atu3130 0.40 -1.3 138,338 - Atu3130 0.46 +1.4 138,368 - Atu3130 0.48 +0.5 138,488 + Atu3130 0.57 +1.3 138,493 - Atu3130 0.58 -0.5 138,642 + Atu3130 0.70 +1.0
Or see this region's nucleotide sequence