Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0844 and Atu0845 are separated by 110 nucleotides Atu0845 and Atu0846 are separated by 55 nucleotides Atu0846 and Atu0847 are separated by 192 nucleotides Atu0847 and Atu0848 are separated by 109 nucleotides
Atu0844: Atu0844 - hypothetical protein, at 846,354 to 847,262
Atu0844
Atu0845: Atu0845 - hypothetical protein, at 847,373 to 848,146
Atu0845
Atu0846: Atu0846 - transcriptional regulator, MarR family, at 848,202 to 848,660
Atu0846
Atu0847: Atu0847 - organic hydroperoxide resistance protein, at 848,853 to 849,275
Atu0847
Atu0848: Atu0848 - hypothetical protein, at 849,385 to 849,768
Atu0848
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 847.228 kb on - strand at 847.228 kb on - strand at 847.240 kb on - strand at 847.247 kb on + strand at 847.255 kb on - strand at 847.306 kb on + strand at 847.358 kb on - strand at 847.520 kb on + strand, within Atu0845 at 847.717 kb on + strand, within Atu0845 at 847.768 kb on - strand, within Atu0845 at 847.976 kb on + strand, within Atu0845 at 848.015 kb on + strand, within Atu0845 at 848.038 kb on - strand, within Atu0845 at 848.038 kb on - strand, within Atu0845 at 848.147 kb on + strand at 848.358 kb on - strand, within Atu0846 at 848.389 kb on - strand, within Atu0846 at 848.399 kb on - strand, within Atu0846 at 848.571 kb on + strand, within Atu0846 at 848.579 kb on - strand, within Atu0846 at 848.609 kb on + strand, within Atu0846 at 848.617 kb on - strand at 848.842 kb on - strand at 848.863 kb on - strand at 848.869 kb on + strand at 848.870 kb on - strand at 848.912 kb on + strand, within Atu0847 at 848.937 kb on + strand, within Atu0847 at 849.016 kb on - strand, within Atu0847 at 849.035 kb on + strand, within Atu0847 at 849.051 kb on + strand, within Atu0847 at 849.062 kb on + strand, within Atu0847 at 849.077 kb on + strand, within Atu0847 at 849.077 kb on + strand, within Atu0847 at 849.111 kb on - strand, within Atu0847 at 849.111 kb on - strand, within Atu0847 at 849.148 kb on + strand, within Atu0847 at 849.237 kb on - strand at 849.247 kb on + strand at 849.247 kb on - strand at 849.298 kb on + strand at 849.415 kb on - strand at 849.475 kb on - strand, within Atu0848
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 847,228 - +0.6 847,228 - +2.1 847,240 - -0.1 847,247 + +1.0 847,255 - -0.5 847,306 + -1.4 847,358 - +0.3 847,520 + Atu0845 0.19 +0.1 847,717 + Atu0845 0.44 +0.4 847,768 - Atu0845 0.51 +0.2 847,976 + Atu0845 0.78 -2.3 848,015 + Atu0845 0.83 +1.1 848,038 - Atu0845 0.86 +1.8 848,038 - Atu0845 0.86 -0.2 848,147 + +3.5 848,358 - Atu0846 0.34 -1.2 848,389 - Atu0846 0.41 -1.5 848,399 - Atu0846 0.43 -0.7 848,571 + Atu0846 0.80 -0.5 848,579 - Atu0846 0.82 -1.3 848,609 + Atu0846 0.89 -2.7 848,617 - -1.6 848,842 - -2.4 848,863 - +2.3 848,869 + -0.2 848,870 - -2.4 848,912 + Atu0847 0.14 +1.0 848,937 + Atu0847 0.20 +0.2 849,016 - Atu0847 0.39 +0.5 849,035 + Atu0847 0.43 -1.1 849,051 + Atu0847 0.47 +0.6 849,062 + Atu0847 0.49 +1.0 849,077 + Atu0847 0.53 +0.4 849,077 + Atu0847 0.53 +0.1 849,111 - Atu0847 0.61 -1.6 849,111 - Atu0847 0.61 -2.1 849,148 + Atu0847 0.70 -1.8 849,237 - -0.3 849,247 + +3.8 849,247 - +0.5 849,298 + +0.6 849,415 - +1.8 849,475 - Atu0848 0.23 +1.5
Or see this region's nucleotide sequence