Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0200 and Atu0201 are separated by 168 nucleotides Atu0201 and Atu0202 are separated by 158 nucleotides
Atu0200: Atu0200 - hypothetical protein, at 204,265 to 205,311
Atu0200
Atu0201: Atu0201 - hypothetical protein, at 205,480 to 205,950
Atu0201
Atu0202: Atu0202 - ABC transporter, substrate binding protein (iron), at 206,109 to 207,173
Atu0202
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 204.546 kb on + strand, within Atu0200 at 204.606 kb on + strand, within Atu0200 at 204.803 kb on + strand, within Atu0200 at 204.806 kb on - strand, within Atu0200 at 204.871 kb on - strand, within Atu0200 at 204.881 kb on - strand, within Atu0200 at 204.986 kb on + strand, within Atu0200 at 205.066 kb on - strand, within Atu0200 at 205.161 kb on + strand, within Atu0200 at 205.231 kb on - strand at 205.245 kb on + strand at 205.248 kb on - strand at 205.298 kb on + strand at 205.435 kb on + strand at 205.510 kb on - strand at 205.561 kb on - strand, within Atu0201 at 205.561 kb on - strand, within Atu0201 at 205.975 kb on + strand at 206.062 kb on - strand at 206.185 kb on - strand at 206.227 kb on - strand, within Atu0202 at 206.236 kb on + strand, within Atu0202 at 206.241 kb on + strand, within Atu0202 at 206.246 kb on + strand, within Atu0202 at 206.317 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.340 kb on - strand, within Atu0202 at 206.401 kb on - strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.432 kb on + strand, within Atu0202 at 206.561 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.670 kb on + strand, within Atu0202 at 206.702 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.878 kb on - strand, within Atu0202
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 204,546 + Atu0200 0.27 +0.2 204,606 + Atu0200 0.33 +0.1 204,803 + Atu0200 0.51 +0.2 204,806 - Atu0200 0.52 -2.6 204,871 - Atu0200 0.58 -1.6 204,881 - Atu0200 0.59 -2.6 204,986 + Atu0200 0.69 +0.9 205,066 - Atu0200 0.77 +2.6 205,161 + Atu0200 0.86 -0.4 205,231 - -1.6 205,245 + -1.4 205,248 - +0.5 205,298 + +0.8 205,435 + +0.6 205,510 - +0.0 205,561 - Atu0201 0.17 -1.5 205,561 - Atu0201 0.17 -0.6 205,975 + -1.2 206,062 - +0.4 206,185 - -0.8 206,227 - Atu0202 0.11 -1.5 206,236 + Atu0202 0.12 -1.3 206,241 + Atu0202 0.12 -0.3 206,246 + Atu0202 0.13 +0.4 206,317 - Atu0202 0.20 +5.4 206,338 - Atu0202 0.22 +0.1 206,338 - Atu0202 0.22 +0.5 206,340 - Atu0202 0.22 +0.9 206,401 - Atu0202 0.27 +1.1 206,408 + Atu0202 0.28 +0.5 206,408 + Atu0202 0.28 -0.4 206,408 + Atu0202 0.28 -0.3 206,432 + Atu0202 0.30 -0.2 206,561 - Atu0202 0.42 -0.6 206,600 - Atu0202 0.46 -0.2 206,600 - Atu0202 0.46 +0.2 206,670 + Atu0202 0.53 -0.0 206,702 + Atu0202 0.56 -0.0 206,813 + Atu0202 0.66 +0.3 206,813 + Atu0202 0.66 +1.8 206,878 - Atu0202 0.72 -2.7
Or see this region's nucleotide sequence