Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5435 and Atu5436 are separated by 243 nucleotides Atu5436 and Atu5437 are separated by 311 nucleotides Atu5437 and Atu5438 are separated by 81 nucleotides
Atu5435: Atu5435 - oxidoreductase, at 428,152 to 429,324
Atu5435
Atu5436: Atu5436 - myo-inositol catabolism protein, at 429,568 to 430,470
Atu5436
Atu5437: Atu5437 - hypothetical protein, at 430,782 to 431,174
Atu5437
Atu5438: Atu5438 - 3-oxoacyl-ACP reductase, at 431,256 to 431,987
Atu5438
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 428.573 kb on + strand, within Atu5435 at 428.580 kb on - strand, within Atu5435 at 428.580 kb on - strand, within Atu5435 at 428.676 kb on - strand, within Atu5435 at 428.698 kb on + strand, within Atu5435 at 428.698 kb on + strand, within Atu5435 at 428.698 kb on + strand, within Atu5435 at 428.706 kb on - strand, within Atu5435 at 428.736 kb on - strand, within Atu5435 at 428.750 kb on + strand, within Atu5435 at 428.766 kb on + strand, within Atu5435 at 428.774 kb on - strand, within Atu5435 at 428.776 kb on + strand, within Atu5435 at 428.779 kb on - strand, within Atu5435 at 428.837 kb on - strand, within Atu5435 at 428.869 kb on + strand, within Atu5435 at 428.904 kb on - strand, within Atu5435 at 428.922 kb on + strand, within Atu5435 at 428.923 kb on + strand, within Atu5435 at 428.927 kb on + strand, within Atu5435 at 428.935 kb on - strand, within Atu5435 at 428.968 kb on - strand, within Atu5435 at 428.968 kb on - strand, within Atu5435 at 429.010 kb on - strand, within Atu5435 at 429.066 kb on - strand, within Atu5435 at 429.174 kb on - strand, within Atu5435 at 429.179 kb on + strand, within Atu5435 at 429.213 kb on - strand at 429.237 kb on + strand at 429.257 kb on - strand at 429.313 kb on + strand at 429.345 kb on - strand at 429.388 kb on + strand at 429.422 kb on + strand at 429.447 kb on + strand at 429.447 kb on + strand at 429.447 kb on + strand at 429.455 kb on - strand at 429.503 kb on - strand at 429.521 kb on - strand at 429.521 kb on - strand at 429.521 kb on - strand at 429.533 kb on + strand at 429.547 kb on - strand at 429.547 kb on - strand at 429.578 kb on + strand at 429.578 kb on + strand at 429.586 kb on - strand at 429.586 kb on - strand at 429.608 kb on + strand at 429.631 kb on - strand at 429.643 kb on + strand at 429.643 kb on + strand at 429.667 kb on - strand, within Atu5436 at 429.690 kb on + strand, within Atu5436 at 429.698 kb on - strand, within Atu5436 at 429.698 kb on - strand, within Atu5436 at 429.698 kb on - strand, within Atu5436 at 429.698 kb on - strand, within Atu5436 at 429.719 kb on + strand, within Atu5436 at 429.727 kb on - strand, within Atu5436 at 429.756 kb on - strand, within Atu5436 at 429.926 kb on + strand, within Atu5436 at 429.957 kb on + strand, within Atu5436 at 430.034 kb on - strand, within Atu5436 at 430.034 kb on - strand, within Atu5436 at 430.066 kb on + strand, within Atu5436 at 430.071 kb on - strand, within Atu5436 at 430.086 kb on + strand, within Atu5436 at 430.086 kb on + strand, within Atu5436 at 430.176 kb on - strand, within Atu5436 at 430.176 kb on - strand, within Atu5436 at 430.196 kb on + strand, within Atu5436 at 430.255 kb on - strand, within Atu5436 at 430.260 kb on - strand, within Atu5436 at 430.314 kb on + strand, within Atu5436 at 430.375 kb on + strand, within Atu5436 at 430.428 kb on + strand at 430.479 kb on - strand at 430.591 kb on + strand at 430.650 kb on - strand at 430.660 kb on - strand at 430.664 kb on + strand at 430.698 kb on - strand at 430.844 kb on - strand, within Atu5437 at 430.974 kb on + strand, within Atu5437 at 430.982 kb on - strand, within Atu5437 at 430.986 kb on + strand, within Atu5437 at 431.053 kb on - strand, within Atu5437 at 431.053 kb on - strand, within Atu5437 at 431.058 kb on - strand, within Atu5437 at 431.124 kb on + strand, within Atu5437 at 431.132 kb on - strand, within Atu5437 at 431.134 kb on - strand, within Atu5437 at 431.157 kb on - strand at 431.259 kb on + strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.275 kb on + strand at 431.283 kb on - strand at 431.283 kb on - strand at 431.312 kb on - strand at 431.408 kb on - strand, within Atu5438
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 428,573 + Atu5435 0.36 -0.8 428,580 - Atu5435 0.36 -0.7 428,580 - Atu5435 0.36 -1.7 428,676 - Atu5435 0.45 -1.1 428,698 + Atu5435 0.47 +0.2 428,698 + Atu5435 0.47 -0.7 428,698 + Atu5435 0.47 +0.5 428,706 - Atu5435 0.47 -0.4 428,736 - Atu5435 0.50 +0.8 428,750 + Atu5435 0.51 +0.5 428,766 + Atu5435 0.52 -0.3 428,774 - Atu5435 0.53 +0.1 428,776 + Atu5435 0.53 -3.0 428,779 - Atu5435 0.53 -0.5 428,837 - Atu5435 0.58 -0.5 428,869 + Atu5435 0.61 -0.1 428,904 - Atu5435 0.64 +0.6 428,922 + Atu5435 0.66 -0.7 428,923 + Atu5435 0.66 -0.4 428,927 + Atu5435 0.66 +0.2 428,935 - Atu5435 0.67 -0.5 428,968 - Atu5435 0.70 +0.2 428,968 - Atu5435 0.70 -0.3 429,010 - Atu5435 0.73 +0.4 429,066 - Atu5435 0.78 +0.5 429,174 - Atu5435 0.87 +0.0 429,179 + Atu5435 0.88 -0.5 429,213 - -2.8 429,237 + +0.5 429,257 - -1.1 429,313 + -0.6 429,345 - -0.4 429,388 + +0.1 429,422 + +0.1 429,447 + +0.5 429,447 + -1.5 429,447 + +0.5 429,455 - +0.0 429,503 - +1.7 429,521 - +0.8 429,521 - +0.9 429,521 - +0.1 429,533 + +2.6 429,547 - +0.2 429,547 - +0.0 429,578 + -1.0 429,578 + -0.2 429,586 - -1.8 429,586 - -0.0 429,608 + +0.7 429,631 - +1.5 429,643 + -0.1 429,643 + -2.2 429,667 - Atu5436 0.11 -0.1 429,690 + Atu5436 0.14 -0.1 429,698 - Atu5436 0.14 +1.3 429,698 - Atu5436 0.14 +0.7 429,698 - Atu5436 0.14 +0.2 429,698 - Atu5436 0.14 -0.6 429,719 + Atu5436 0.17 -0.1 429,727 - Atu5436 0.18 +1.3 429,756 - Atu5436 0.21 +0.0 429,926 + Atu5436 0.40 +0.6 429,957 + Atu5436 0.43 +0.1 430,034 - Atu5436 0.52 -0.0 430,034 - Atu5436 0.52 +0.3 430,066 + Atu5436 0.55 +0.5 430,071 - Atu5436 0.56 +0.5 430,086 + Atu5436 0.57 +0.6 430,086 + Atu5436 0.57 -0.9 430,176 - Atu5436 0.67 +0.2 430,176 - Atu5436 0.67 +2.1 430,196 + Atu5436 0.70 +0.2 430,255 - Atu5436 0.76 +0.2 430,260 - Atu5436 0.77 +0.6 430,314 + Atu5436 0.83 -1.2 430,375 + Atu5436 0.89 -0.7 430,428 + -0.0 430,479 - +0.4 430,591 + -0.1 430,650 - +0.5 430,660 - -0.2 430,664 + +0.3 430,698 - +0.7 430,844 - Atu5437 0.16 +1.6 430,974 + Atu5437 0.49 +0.7 430,982 - Atu5437 0.51 +0.4 430,986 + Atu5437 0.52 -1.8 431,053 - Atu5437 0.69 +0.4 431,053 - Atu5437 0.69 -0.5 431,058 - Atu5437 0.70 -0.4 431,124 + Atu5437 0.87 +1.3 431,132 - Atu5437 0.89 +1.8 431,134 - Atu5437 0.90 -2.7 431,157 - +0.1 431,259 + +0.4 431,267 - -2.3 431,267 - -0.6 431,275 + -0.5 431,283 - -1.1 431,283 - +0.6 431,312 - -2.4 431,408 - Atu5438 0.21 +0.1
Or see this region's nucleotide sequence