Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5410 and Atu5411 are separated by 19 nucleotides Atu5411 and Atu5412 are separated by 9 nucleotides Atu5412 and Atu5413 overlap by 8 nucleotides
Atu5410: Atu5410 - ABC transporter nucleotide binding/ATPase, at 405,297 to 406,412
Atu5410
Atu5411: Atu5411 - ABC transporter substrate binding protein, at 406,432 to 407,472
Atu5411
Atu5412: Atu5412 - ABC transporter membrane spanning protein, at 407,482 to 408,309
Atu5412
Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123
Atu5413
Position (kb) 406
407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 405.433 kb on - strand, within Atu5410 at 405.474 kb on + strand, within Atu5410 at 405.496 kb on + strand, within Atu5410 at 405.506 kb on + strand, within Atu5410 at 405.521 kb on - strand, within Atu5410 at 405.539 kb on - strand, within Atu5410 at 405.590 kb on - strand, within Atu5410 at 405.697 kb on - strand, within Atu5410 at 405.697 kb on - strand, within Atu5410 at 405.703 kb on + strand, within Atu5410 at 405.745 kb on - strand, within Atu5410 at 405.753 kb on - strand, within Atu5410 at 405.758 kb on - strand, within Atu5410 at 405.758 kb on - strand, within Atu5410 at 405.776 kb on + strand, within Atu5410 at 405.810 kb on + strand, within Atu5410 at 405.818 kb on - strand, within Atu5410 at 405.818 kb on - strand, within Atu5410 at 405.818 kb on - strand, within Atu5410 at 405.818 kb on - strand, within Atu5410 at 405.818 kb on - strand, within Atu5410 at 405.887 kb on + strand, within Atu5410 at 405.901 kb on + strand, within Atu5410 at 405.917 kb on + strand, within Atu5410 at 405.999 kb on + strand, within Atu5410 at 406.026 kb on + strand, within Atu5410 at 406.039 kb on - strand, within Atu5410 at 406.046 kb on - strand, within Atu5410 at 406.168 kb on + strand, within Atu5410 at 406.186 kb on + strand, within Atu5410 at 406.192 kb on - strand, within Atu5410 at 406.226 kb on - strand, within Atu5410 at 406.243 kb on + strand, within Atu5410 at 406.243 kb on + strand, within Atu5410 at 406.243 kb on + strand, within Atu5410 at 406.251 kb on - strand, within Atu5410 at 406.251 kb on - strand, within Atu5410 at 406.251 kb on - strand, within Atu5410 at 406.251 kb on - strand, within Atu5410 at 406.279 kb on + strand, within Atu5410 at 406.302 kb on - strand at 406.339 kb on - strand at 406.344 kb on - strand at 406.363 kb on - strand at 406.378 kb on - strand at 406.398 kb on - strand at 406.416 kb on + strand at 406.416 kb on + strand at 406.421 kb on + strand at 406.429 kb on - strand at 406.532 kb on - strand at 406.535 kb on - strand at 406.572 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.582 kb on + strand, within Atu5411 at 406.590 kb on - strand, within Atu5411 at 406.590 kb on - strand, within Atu5411 at 406.590 kb on - strand, within Atu5411 at 406.590 kb on - strand, within Atu5411 at 406.590 kb on - strand, within Atu5411 at 406.596 kb on + strand, within Atu5411 at 406.603 kb on - strand, within Atu5411 at 406.603 kb on - strand, within Atu5411 at 406.610 kb on + strand, within Atu5411 at 406.647 kb on - strand, within Atu5411 at 406.659 kb on + strand, within Atu5411 at 406.667 kb on - strand, within Atu5411 at 406.706 kb on + strand, within Atu5411 at 406.759 kb on - strand, within Atu5411 at 406.831 kb on + strand, within Atu5411 at 406.844 kb on - strand, within Atu5411 at 406.871 kb on - strand, within Atu5411 at 406.886 kb on - strand, within Atu5411 at 406.908 kb on + strand, within Atu5411 at 406.915 kb on + strand, within Atu5411 at 407.025 kb on + strand, within Atu5411 at 407.025 kb on + strand, within Atu5411 at 407.033 kb on - strand, within Atu5411 at 407.033 kb on - strand, within Atu5411 at 407.046 kb on + strand, within Atu5411 at 407.054 kb on - strand, within Atu5411 at 407.054 kb on - strand, within Atu5411 at 407.054 kb on - strand, within Atu5411 at 407.078 kb on + strand, within Atu5411 at 407.079 kb on + strand, within Atu5411 at 407.220 kb on + strand, within Atu5411 at 407.256 kb on - strand, within Atu5411 at 407.274 kb on + strand, within Atu5411 at 407.380 kb on + strand at 407.416 kb on - strand at 407.467 kb on + strand at 407.472 kb on + strand at 407.480 kb on - strand at 407.575 kb on - strand, within Atu5412 at 407.581 kb on - strand, within Atu5412 at 407.591 kb on + strand, within Atu5412 at 407.657 kb on + strand, within Atu5412 at 407.657 kb on - strand, within Atu5412 at 407.665 kb on - strand, within Atu5412 at 407.679 kb on - strand, within Atu5412 at 407.692 kb on + strand, within Atu5412 at 407.702 kb on + strand, within Atu5412 at 407.726 kb on - strand, within Atu5412 at 407.726 kb on - strand, within Atu5412 at 407.840 kb on - strand, within Atu5412 at 407.862 kb on - strand, within Atu5412 at 407.871 kb on + strand, within Atu5412 at 407.983 kb on + strand, within Atu5412 at 408.002 kb on - strand, within Atu5412 at 408.056 kb on - strand, within Atu5412 at 408.069 kb on - strand, within Atu5412 at 408.073 kb on - strand, within Atu5412 at 408.088 kb on + strand, within Atu5412 at 408.224 kb on + strand, within Atu5412 at 408.232 kb on - strand at 408.232 kb on - strand at 408.232 kb on - strand at 408.340 kb on + strand at 408.369 kb on + strand at 408.369 kb on + strand at 408.374 kb on + strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.429 kb on - strand, within Atu5413
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 405,433 - Atu5410 0.12 +1.9 405,474 + Atu5410 0.16 +2.1 405,496 + Atu5410 0.18 +2.3 405,506 + Atu5410 0.19 +0.0 405,521 - Atu5410 0.20 +0.7 405,539 - Atu5410 0.22 -0.4 405,590 - Atu5410 0.26 +1.2 405,697 - Atu5410 0.36 -0.9 405,697 - Atu5410 0.36 -0.2 405,703 + Atu5410 0.36 +0.8 405,745 - Atu5410 0.40 -1.0 405,753 - Atu5410 0.41 +0.8 405,758 - Atu5410 0.41 -0.6 405,758 - Atu5410 0.41 +1.9 405,776 + Atu5410 0.43 -3.4 405,810 + Atu5410 0.46 +0.4 405,818 - Atu5410 0.47 -0.4 405,818 - Atu5410 0.47 -0.1 405,818 - Atu5410 0.47 +0.6 405,818 - Atu5410 0.47 -1.0 405,818 - Atu5410 0.47 -1.3 405,887 + Atu5410 0.53 -0.4 405,901 + Atu5410 0.54 +0.7 405,917 + Atu5410 0.56 +0.7 405,999 + Atu5410 0.63 +0.6 406,026 + Atu5410 0.65 +0.0 406,039 - Atu5410 0.66 -0.2 406,046 - Atu5410 0.67 +0.6 406,168 + Atu5410 0.78 -0.1 406,186 + Atu5410 0.80 +0.8 406,192 - Atu5410 0.80 -1.5 406,226 - Atu5410 0.83 +0.5 406,243 + Atu5410 0.85 -0.3 406,243 + Atu5410 0.85 -2.9 406,243 + Atu5410 0.85 +0.1 406,251 - Atu5410 0.85 -0.0 406,251 - Atu5410 0.85 -0.3 406,251 - Atu5410 0.85 +1.0 406,251 - Atu5410 0.85 +0.5 406,279 + Atu5410 0.88 +0.2 406,302 - +0.5 406,339 - -0.5 406,344 - -1.3 406,363 - -0.7 406,378 - +0.7 406,398 - +1.5 406,416 + +1.0 406,416 + -1.0 406,421 + -0.6 406,429 - -0.4 406,532 - +0.7 406,535 - -0.3 406,572 + Atu5411 0.13 -1.8 406,582 + Atu5411 0.14 -0.4 406,582 + Atu5411 0.14 +0.3 406,582 + Atu5411 0.14 +0.1 406,582 + Atu5411 0.14 -1.4 406,582 + Atu5411 0.14 -0.8 406,582 + Atu5411 0.14 +0.1 406,590 - Atu5411 0.15 +0.2 406,590 - Atu5411 0.15 -2.6 406,590 - Atu5411 0.15 -1.4 406,590 - Atu5411 0.15 -1.5 406,590 - Atu5411 0.15 +0.7 406,596 + Atu5411 0.16 -0.3 406,603 - Atu5411 0.16 +1.1 406,603 - Atu5411 0.16 -1.3 406,610 + Atu5411 0.17 +0.0 406,647 - Atu5411 0.21 +0.6 406,659 + Atu5411 0.22 +0.2 406,667 - Atu5411 0.23 -0.8 406,706 + Atu5411 0.26 +0.8 406,759 - Atu5411 0.31 -0.1 406,831 + Atu5411 0.38 +0.7 406,844 - Atu5411 0.40 +0.4 406,871 - Atu5411 0.42 -0.3 406,886 - Atu5411 0.44 -1.3 406,908 + Atu5411 0.46 -1.8 406,915 + Atu5411 0.46 +0.1 407,025 + Atu5411 0.57 +2.1 407,025 + Atu5411 0.57 -1.1 407,033 - Atu5411 0.58 -0.0 407,033 - Atu5411 0.58 -3.5 407,046 + Atu5411 0.59 -0.4 407,054 - Atu5411 0.60 -0.1 407,054 - Atu5411 0.60 -0.6 407,054 - Atu5411 0.60 -0.4 407,078 + Atu5411 0.62 +0.4 407,079 + Atu5411 0.62 -2.4 407,220 + Atu5411 0.76 +0.1 407,256 - Atu5411 0.79 -2.2 407,274 + Atu5411 0.81 -0.0 407,380 + +2.0 407,416 - +0.6 407,467 + -1.7 407,472 + +0.5 407,480 - -0.3 407,575 - Atu5412 0.11 -1.2 407,581 - Atu5412 0.12 +0.5 407,591 + Atu5412 0.13 -0.3 407,657 + Atu5412 0.21 -3.5 407,657 - Atu5412 0.21 -0.4 407,665 - Atu5412 0.22 +0.2 407,679 - Atu5412 0.24 -0.3 407,692 + Atu5412 0.25 -0.5 407,702 + Atu5412 0.27 -0.6 407,726 - Atu5412 0.29 +0.6 407,726 - Atu5412 0.29 -0.1 407,840 - Atu5412 0.43 -0.1 407,862 - Atu5412 0.46 +0.0 407,871 + Atu5412 0.47 -0.4 407,983 + Atu5412 0.61 -3.8 408,002 - Atu5412 0.63 -0.8 408,056 - Atu5412 0.69 +0.5 408,069 - Atu5412 0.71 -1.3 408,073 - Atu5412 0.71 +0.6 408,088 + Atu5412 0.73 +0.9 408,224 + Atu5412 0.90 -0.7 408,232 - -1.1 408,232 - -0.1 408,232 - +1.0 408,340 + -0.8 408,369 + +0.5 408,369 + +0.3 408,374 + +0.2 408,377 - -0.4 408,377 - -0.1 408,377 - -0.5 408,377 - +0.4 408,429 - Atu5413 0.15 +1.4
Or see this region's nucleotide sequence