Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3757 and Atu3758 are separated by 68 nucleotides Atu3758 and Atu3759 are separated by 148 nucleotides Atu3759 and Atu3760 are separated by 15 nucleotides Atu3760 and Atu3761 are separated by 138 nucleotides
Atu3757: Atu3757 - hypothetical protein, at 838,359 to 838,979
Atu3757
Atu3758: Atu3758 - hypothetical protein, at 839,048 to 839,305
Atu3758
Atu3759: Atu3759 - hypothetical protein, at 839,454 to 839,759
Atu3759
Atu3760: Atu3760 - hypothetical protein, at 839,775 to 840,563
Atu3760
Atu3761: Atu3761 - hypothetical protein, at 840,702 to 841,241
Atu3761
Position (kb) 839
840 Strain fitness (log2 ratio) -2
-1
0
1 at 838.541 kb on + strand, within Atu3757 at 838.614 kb on - strand, within Atu3757 at 838.895 kb on + strand, within Atu3757 at 838.947 kb on - strand at 838.975 kb on + strand at 839.412 kb on - strand at 839.469 kb on + strand at 839.553 kb on - strand, within Atu3759 at 839.729 kb on + strand at 839.737 kb on - strand at 839.773 kb on + strand at 839.776 kb on + strand at 839.827 kb on - strand at 839.928 kb on + strand, within Atu3760 at 839.968 kb on + strand, within Atu3760 at 840.033 kb on + strand, within Atu3760 at 840.041 kb on - strand, within Atu3760 at 840.069 kb on + strand, within Atu3760 at 840.069 kb on + strand, within Atu3760 at 840.124 kb on - strand, within Atu3760 at 840.161 kb on + strand, within Atu3760 at 840.167 kb on - strand, within Atu3760 at 840.186 kb on + strand, within Atu3760 at 840.186 kb on + strand, within Atu3760 at 840.348 kb on - strand, within Atu3760 at 840.380 kb on + strand, within Atu3760 at 840.497 kb on - strand at 840.582 kb on + strand at 840.582 kb on + strand at 840.582 kb on + strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.610 kb on + strand at 840.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 838,541 + Atu3757 0.29 -0.1 838,614 - Atu3757 0.41 -1.8 838,895 + Atu3757 0.86 +0.6 838,947 - +0.1 838,975 + +0.5 839,412 - -0.2 839,469 + -1.1 839,553 - Atu3759 0.32 -1.1 839,729 + +0.1 839,737 - -0.9 839,773 + -0.9 839,776 + -0.3 839,827 - -2.0 839,928 + Atu3760 0.19 +0.6 839,968 + Atu3760 0.24 +0.6 840,033 + Atu3760 0.33 +0.3 840,041 - Atu3760 0.34 -1.1 840,069 + Atu3760 0.37 -0.0 840,069 + Atu3760 0.37 +0.4 840,124 - Atu3760 0.44 -0.5 840,161 + Atu3760 0.49 -1.7 840,167 - Atu3760 0.50 +0.3 840,186 + Atu3760 0.52 +1.4 840,186 + Atu3760 0.52 +0.2 840,348 - Atu3760 0.73 -0.9 840,380 + Atu3760 0.77 -1.4 840,497 - -0.9 840,582 + +1.1 840,582 + -0.9 840,582 + -0.6 840,590 - +0.2 840,590 - +0.6 840,610 + -0.8 840,610 + -0.7
Or see this region's nucleotide sequence