Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3322 and Atu3323 are separated by 8 nucleotides Atu3323 and Atu3324 are separated by 83 nucleotides Atu3324 and Atu3325 overlap by 4 nucleotides
Atu3322: Atu3322 - ABC transporter permease, at 354,773 to 356,428
Atu3322
Atu3323: Atu3323 - HlyD family secretion protein, at 356,437 to 357,795
Atu3323
Atu3324: Atu3324 - hypothetical protein, at 357,879 to 358,373
Atu3324
Atu3325: Atu3325 - exopolysaccharide production protein, at 358,370 to 359,638
Atu3325
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 355.614 kb on + strand, within Atu3322 at 355.826 kb on - strand, within Atu3322 at 355.850 kb on + strand, within Atu3322 at 355.899 kb on + strand, within Atu3322 at 355.940 kb on + strand, within Atu3322 at 355.969 kb on + strand, within Atu3322 at 356.082 kb on - strand, within Atu3322 at 356.118 kb on - strand, within Atu3322 at 356.129 kb on - strand, within Atu3322 at 356.163 kb on - strand, within Atu3322 at 356.194 kb on + strand, within Atu3322 at 356.196 kb on - strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.358 kb on + strand at 356.423 kb on + strand at 356.424 kb on - strand at 356.448 kb on + strand at 356.486 kb on - strand at 356.498 kb on + strand at 356.501 kb on - strand at 356.501 kb on - strand at 356.513 kb on + strand at 356.545 kb on - strand at 356.545 kb on - strand at 356.580 kb on + strand, within Atu3323 at 356.614 kb on + strand, within Atu3323 at 356.651 kb on - strand, within Atu3323 at 356.822 kb on + strand, within Atu3323 at 356.833 kb on + strand, within Atu3323 at 356.976 kb on + strand, within Atu3323 at 357.106 kb on + strand, within Atu3323 at 357.155 kb on - strand, within Atu3323 at 357.322 kb on + strand, within Atu3323 at 357.374 kb on + strand, within Atu3323 at 357.380 kb on + strand, within Atu3323 at 357.498 kb on + strand, within Atu3323 at 357.613 kb on - strand, within Atu3323 at 357.620 kb on - strand, within Atu3323 at 357.621 kb on + strand, within Atu3323 at 357.631 kb on - strand, within Atu3323 at 357.719 kb on - strand at 357.808 kb on + strand at 357.816 kb on - strand at 357.850 kb on + strand at 357.897 kb on - strand at 357.932 kb on + strand, within Atu3324 at 358.075 kb on - strand, within Atu3324 at 358.096 kb on - strand, within Atu3324 at 358.200 kb on + strand, within Atu3324 at 358.220 kb on + strand, within Atu3324 at 358.263 kb on - strand, within Atu3324 at 358.321 kb on - strand, within Atu3324 at 358.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 355,614 + Atu3322 0.51 +0.5 355,826 - Atu3322 0.64 -1.2 355,850 + Atu3322 0.65 +0.5 355,899 + Atu3322 0.68 -1.5 355,940 + Atu3322 0.70 -0.5 355,969 + Atu3322 0.72 -1.0 356,082 - Atu3322 0.79 +0.5 356,118 - Atu3322 0.81 +0.1 356,129 - Atu3322 0.82 +0.8 356,163 - Atu3322 0.84 +0.3 356,194 + Atu3322 0.86 +0.6 356,196 - Atu3322 0.86 +0.5 356,227 + Atu3322 0.88 -0.6 356,227 + Atu3322 0.88 -1.1 356,358 + -0.3 356,423 + -0.6 356,424 - -1.4 356,448 + -0.7 356,486 - -0.8 356,498 + +0.5 356,501 - +0.4 356,501 - -1.7 356,513 + -1.8 356,545 - +0.1 356,545 - -0.0 356,580 + Atu3323 0.11 -2.2 356,614 + Atu3323 0.13 +0.8 356,651 - Atu3323 0.16 -0.2 356,822 + Atu3323 0.28 +2.1 356,833 + Atu3323 0.29 +0.8 356,976 + Atu3323 0.40 +0.3 357,106 + Atu3323 0.49 +1.3 357,155 - Atu3323 0.53 -0.1 357,322 + Atu3323 0.65 -1.9 357,374 + Atu3323 0.69 -1.3 357,380 + Atu3323 0.69 +1.1 357,498 + Atu3323 0.78 -0.1 357,613 - Atu3323 0.87 -1.1 357,620 - Atu3323 0.87 +1.2 357,621 + Atu3323 0.87 +0.7 357,631 - Atu3323 0.88 +3.4 357,719 - +0.2 357,808 + -1.3 357,816 - +0.4 357,850 + -3.1 357,897 - +0.1 357,932 + Atu3324 0.11 +1.7 358,075 - Atu3324 0.40 +0.6 358,096 - Atu3324 0.44 -0.6 358,200 + Atu3324 0.65 -0.5 358,220 + Atu3324 0.69 -0.5 358,263 - Atu3324 0.78 -1.1 358,321 - Atu3324 0.89 -0.8 358,421 - -1.7
Or see this region's nucleotide sequence