Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0150 and Atu0151 are separated by 75 nucleotides Atu0151 and Atu0152 are separated by 70 nucleotides Atu0152 and Atu0153 overlap by 11 nucleotides Atu0153 and Atu0154 are separated by 75 nucleotides
Atu0150: Atu0150 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 158,274 to 159,497
Atu0150
Atu0151: Atu0151 - D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase, at 159,573 to 160,088
Atu0151
Atu0152: Atu0152 - hypothetical protein, at 160,159 to 160,416
Atu0152
Atu0153: Atu0153 - transcriptional regulator, Fur family, at 160,406 to 160,825
Atu0153
Atu0154: Atu0154 - hypothetical protein, at 160,901 to 161,539
Atu0154
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.217 kb on + strand, within Atu0152 at 160.329 kb on - strand, within Atu0152 at 160.429 kb on - strand at 160.442 kb on - strand at 160.447 kb on - strand at 160.457 kb on - strand, within Atu0153 at 160.481 kb on + strand, within Atu0153 at 160.481 kb on + strand, within Atu0153 at 160.583 kb on + strand, within Atu0153 at 160.591 kb on - strand, within Atu0153 at 160.670 kb on - strand, within Atu0153 at 160.761 kb on + strand, within Atu0153 at 160.904 kb on - strand at 160.940 kb on - strand at 160.956 kb on - strand at 161.022 kb on + strand, within Atu0154 at 161.022 kb on + strand, within Atu0154 at 161.030 kb on - strand, within Atu0154 at 161.067 kb on - strand, within Atu0154 at 161.069 kb on + strand, within Atu0154 at 161.069 kb on + strand, within Atu0154 at 161.077 kb on - strand, within Atu0154 at 161.077 kb on - strand, within Atu0154
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 160,217 + Atu0152 0.22 +1.1 160,329 - Atu0152 0.66 -0.1 160,429 - -2.3 160,442 - -0.1 160,447 - -2.4 160,457 - Atu0153 0.12 -2.5 160,481 + Atu0153 0.18 -1.5 160,481 + Atu0153 0.18 -1.2 160,583 + Atu0153 0.42 -1.8 160,591 - Atu0153 0.44 -1.6 160,670 - Atu0153 0.63 -3.0 160,761 + Atu0153 0.85 -1.0 160,904 - -0.2 160,940 - -1.3 160,956 - +1.1 161,022 + Atu0154 0.19 -0.5 161,022 + Atu0154 0.19 +0.1 161,030 - Atu0154 0.20 +0.3 161,067 - Atu0154 0.26 -2.2 161,069 + Atu0154 0.26 -0.6 161,069 + Atu0154 0.26 -0.1 161,077 - Atu0154 0.28 +0.5 161,077 - Atu0154 0.28 +0.4
Or see this region's nucleotide sequence