Strain Fitness in Agrobacterium fabrum C58 around Atu6146

Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6144 and Atu6145 overlap by 8 nucleotidesAtu6145 and Atu6146 overlap by 1 nucleotidesAtu6146 and Atu6147 are separated by 20 nucleotides Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470 Atu6144 Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281 Atu6145 Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739 Atu6146 Atu6147: Atu6147 - conserved hypothetical protein, at 165,760 to 166,743 Atu6147 Atu6148: Atu6148 - transposase, at 166,498 to 167,382 Atu6148 Position (kb) 165 166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 164.296 kb on + strand, within Atu6144at 164.353 kb on + strand, within Atu6144at 164.361 kb on - strand, within Atu6144at 164.445 kb on + strandat 164.447 kb on + strandat 164.469 kb on + strandat 164.477 kb on - strandat 164.477 kb on - strandat 164.550 kb on - strand, within Atu6145at 164.550 kb on - strand, within Atu6145at 164.569 kb on + strand, within Atu6145at 164.576 kb on - strand, within Atu6145at 164.596 kb on - strand, within Atu6145at 164.596 kb on - strand, within Atu6145at 164.725 kb on + strand, within Atu6145at 164.775 kb on + strand, within Atu6145at 164.783 kb on - strand, within Atu6145at 164.783 kb on - strand, within Atu6145at 164.788 kb on - strand, within Atu6145at 164.891 kb on + strand, within Atu6145at 164.899 kb on - strand, within Atu6145at 164.906 kb on + strand, within Atu6145at 164.932 kb on - strand, within Atu6145at 164.986 kb on + strand, within Atu6145at 164.994 kb on - strand, within Atu6145at 165.056 kb on + strand, within Atu6145at 165.062 kb on - strand, within Atu6145at 165.085 kb on - strand, within Atu6145at 165.155 kb on + strand, within Atu6145at 165.159 kb on - strand, within Atu6145at 165.163 kb on - strand, within Atu6145at 165.179 kb on + strand, within Atu6145at 165.179 kb on + strand, within Atu6145at 165.183 kb on - strand, within Atu6145at 165.187 kb on - strand, within Atu6145at 165.221 kb on - strandat 165.242 kb on + strandat 165.291 kb on + strandat 165.299 kb on - strandat 165.299 kb on - strandat 165.322 kb on + strandat 165.330 kb on - strand, within Atu6146at 165.332 kb on + strand, within Atu6146at 165.340 kb on - strand, within Atu6146at 165.366 kb on + strand, within Atu6146at 165.423 kb on + strand, within Atu6146at 165.429 kb on + strand, within Atu6146at 165.439 kb on - strand, within Atu6146at 165.449 kb on - strand, within Atu6146at 165.449 kb on - strand, within Atu6146at 165.534 kb on - strand, within Atu6146at 165.591 kb on + strand, within Atu6146at 165.594 kb on - strand, within Atu6146at 165.600 kb on + strand, within Atu6146at 165.613 kb on - strand, within Atu6146at 165.686 kb on - strand, within Atu6146at 165.754 kb on - strandat 165.777 kb on + strandat 165.836 kb on + strandat 165.874 kb on - strand, within Atu6147at 165.975 kb on - strand, within Atu6147at 166.050 kb on - strand, within Atu6147at 166.078 kb on - strand, within Atu6147at 166.098 kb on + strand, within Atu6147at 166.098 kb on + strand, within Atu6147at 166.098 kb on + strand, within Atu6147at 166.106 kb on - strand, within Atu6147at 166.140 kb on - strand, within Atu6147at 166.142 kb on + strand, within Atu6147at 166.150 kb on - strand, within Atu6147at 166.203 kb on + strand, within Atu6147at 166.211 kb on - strand, within Atu6147at 166.250 kb on + strand, within Atu6147at 166.258 kb on - strand, within Atu6147at 166.282 kb on + strand, within Atu6147at 166.282 kb on + strand, within Atu6147at 166.315 kb on + strand, within Atu6147at 166.337 kb on + strand, within Atu6147at 166.380 kb on - strand, within Atu6147at 166.412 kb on + strand, within Atu6147at 166.532 kb on + strandat 166.564 kb on + strandat 166.592 kb on - strandat 166.607 kb on - strandat 166.613 kb on + strandat 166.614 kb on + strandat 166.634 kb on + strandat 166.642 kb on - strandat 166.657 kb on + strandat 166.662 kb on + strandat 166.664 kb on - strandat 166.670 kb on - strandat 166.670 kb on - strandat 166.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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164,296 + Atu6144 0.78 -0.6
164,353 + Atu6144 0.85 -0.7
164,361 - Atu6144 0.86 -0.3
164,445 + +3.8
164,447 + +1.2
164,469 + +1.3
164,477 - +0.6
164,477 - +0.8
164,550 - Atu6145 0.11 -0.7
164,550 - Atu6145 0.11 +0.1
164,569 + Atu6145 0.13 -0.7
164,576 - Atu6145 0.14 +0.2
164,596 - Atu6145 0.16 +0.8
164,596 - Atu6145 0.16 +0.3
164,725 + Atu6145 0.32 -0.4
164,775 + Atu6145 0.38 -1.1
164,783 - Atu6145 0.39 +0.7
164,783 - Atu6145 0.39 -0.3
164,788 - Atu6145 0.40 -1.5
164,891 + Atu6145 0.52 +3.7
164,899 - Atu6145 0.53 -1.2
164,906 + Atu6145 0.54 +0.5
164,932 - Atu6145 0.57 -0.3
164,986 + Atu6145 0.64 +0.2
164,994 - Atu6145 0.65 +1.4
165,056 + Atu6145 0.72 +0.3
165,062 - Atu6145 0.73 +0.2
165,085 - Atu6145 0.76 +0.2
165,155 + Atu6145 0.84 +0.7
165,159 - Atu6145 0.85 -1.4
165,163 - Atu6145 0.85 +0.6
165,179 + Atu6145 0.87 -1.2
165,179 + Atu6145 0.87 -0.6
165,183 - Atu6145 0.88 +0.7
165,187 - Atu6145 0.88 -0.8
165,221 - +0.8
165,242 + +1.0
165,291 + -0.1
165,299 - -3.1
165,299 - +1.1
165,322 + +0.5
165,330 - Atu6146 0.11 +0.4
165,332 + Atu6146 0.11 +0.4
165,340 - Atu6146 0.13 -0.1
165,366 + Atu6146 0.19 +0.0
165,423 + Atu6146 0.31 -1.0
165,429 + Atu6146 0.32 +1.9
165,439 - Atu6146 0.34 +0.5
165,449 - Atu6146 0.37 +2.8
165,449 - Atu6146 0.37 -0.3
165,534 - Atu6146 0.55 +0.2
165,591 + Atu6146 0.68 +2.0
165,594 - Atu6146 0.68 -0.9
165,600 + Atu6146 0.69 +0.5
165,613 - Atu6146 0.72 +1.1
165,686 - Atu6146 0.88 -2.0
165,754 - -0.1
165,777 + -0.2
165,836 + -0.3
165,874 - Atu6147 0.12 +0.1
165,975 - Atu6147 0.22 -0.4
166,050 - Atu6147 0.29 -0.4
166,078 - Atu6147 0.32 -0.4
166,098 + Atu6147 0.34 -0.3
166,098 + Atu6147 0.34 +0.4
166,098 + Atu6147 0.34 -0.0
166,106 - Atu6147 0.35 -0.9
166,140 - Atu6147 0.39 +0.2
166,142 + Atu6147 0.39 -1.0
166,150 - Atu6147 0.40 -1.9
166,203 + Atu6147 0.45 -1.8
166,211 - Atu6147 0.46 +1.4
166,250 + Atu6147 0.50 +0.3
166,258 - Atu6147 0.51 +0.3
166,282 + Atu6147 0.53 +0.4
166,282 + Atu6147 0.53 +0.1
166,315 + Atu6147 0.56 -0.4
166,337 + Atu6147 0.59 +0.7
166,380 - Atu6147 0.63 +0.2
166,412 + Atu6147 0.66 -1.0
166,532 + -0.6
166,564 + -1.4
166,592 - -4.4
166,607 - -0.7
166,613 + +0.2
166,614 + +0.8
166,634 + -1.0
166,642 - +1.7
166,657 + -0.5
166,662 + +2.9
166,664 - +0.8
166,670 - -0.7
166,670 - +0.6
166,692 - -0.9

Or see this region's nucleotide sequence