Experiment: Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3831 and Atu3832 are separated by 207 nucleotides Atu3832 and Atu3833 are separated by 163 nucleotides Atu3833 and Atu3834 are separated by 12 nucleotides
Atu3831: Atu3831 - phage-related integrase, at 926,945 to 928,135
Atu3831
Atu3832: Atu3832 - hypothetical protein, at 928,343 to 929,884
Atu3832
Atu3833: Atu3833 - hypothetical protein, at 930,048 to 930,587
Atu3833
Atu3834: Atu3834 - hypothetical protein, at 930,600 to 931,295
Atu3834
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 927.469 kb on + strand, within Atu3831 at 927.478 kb on + strand, within Atu3831 at 927.484 kb on - strand, within Atu3831 at 927.486 kb on - strand, within Atu3831 at 927.488 kb on + strand, within Atu3831 at 927.488 kb on + strand, within Atu3831 at 927.562 kb on + strand, within Atu3831 at 927.569 kb on + strand, within Atu3831 at 927.617 kb on + strand, within Atu3831 at 927.618 kb on - strand, within Atu3831 at 927.618 kb on - strand, within Atu3831 at 927.646 kb on - strand, within Atu3831 at 927.653 kb on + strand, within Atu3831 at 927.673 kb on - strand, within Atu3831 at 927.683 kb on - strand, within Atu3831 at 927.745 kb on + strand, within Atu3831 at 927.787 kb on + strand, within Atu3831 at 927.791 kb on + strand, within Atu3831 at 927.797 kb on - strand, within Atu3831 at 927.853 kb on + strand, within Atu3831 at 927.896 kb on + strand, within Atu3831 at 927.896 kb on + strand, within Atu3831 at 927.911 kb on + strand, within Atu3831 at 927.916 kb on + strand, within Atu3831 at 927.924 kb on - strand, within Atu3831 at 927.926 kb on + strand, within Atu3831 at 927.965 kb on - strand, within Atu3831 at 927.995 kb on - strand, within Atu3831 at 928.006 kb on + strand, within Atu3831 at 928.009 kb on - strand, within Atu3831 at 928.014 kb on - strand, within Atu3831 at 928.014 kb on - strand, within Atu3831 at 928.037 kb on + strand at 928.204 kb on - strand at 928.212 kb on + strand at 928.222 kb on + strand at 928.230 kb on - strand at 928.374 kb on + strand at 928.424 kb on + strand at 928.833 kb on + strand, within Atu3832 at 928.883 kb on - strand, within Atu3832 at 929.223 kb on - strand, within Atu3832 at 929.312 kb on + strand, within Atu3832 at 929.312 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.314 kb on + strand, within Atu3832 at 929.321 kb on - strand, within Atu3832 at 929.321 kb on - strand, within Atu3832 at 929.322 kb on - strand, within Atu3832 at 929.322 kb on - strand, within Atu3832 at 929.322 kb on - strand, within Atu3832 at 929.332 kb on - strand, within Atu3832 at 929.332 kb on - strand, within Atu3832 at 929.350 kb on + strand, within Atu3832 at 929.350 kb on + strand, within Atu3832 at 929.369 kb on + strand, within Atu3832 at 929.374 kb on + strand, within Atu3832 at 929.415 kb on - strand, within Atu3832 at 929.422 kb on - strand, within Atu3832 at 929.438 kb on + strand, within Atu3832 at 929.662 kb on - strand, within Atu3832 at 929.673 kb on - strand, within Atu3832 at 929.760 kb on + strand at 929.793 kb on - strand at 929.888 kb on + strand at 929.960 kb on - strand at 930.046 kb on + strand at 930.128 kb on + strand, within Atu3833 at 930.157 kb on + strand, within Atu3833 at 930.256 kb on - strand, within Atu3833 at 930.256 kb on - strand, within Atu3833 at 930.280 kb on - strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.456 kb on - strand, within Atu3833 at 930.456 kb on - strand, within Atu3833 at 930.529 kb on - strand, within Atu3833 at 930.537 kb on + strand at 930.540 kb on - strand at 930.666 kb on - strand at 930.846 kb on - strand, within Atu3834
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 927,469 + Atu3831 0.44 -0.0 927,478 + Atu3831 0.45 +0.3 927,484 - Atu3831 0.45 +1.2 927,486 - Atu3831 0.45 -1.3 927,488 + Atu3831 0.46 -0.0 927,488 + Atu3831 0.46 +0.5 927,562 + Atu3831 0.52 +1.5 927,569 + Atu3831 0.52 -1.6 927,617 + Atu3831 0.56 +1.1 927,618 - Atu3831 0.57 +2.8 927,618 - Atu3831 0.57 -1.2 927,646 - Atu3831 0.59 +0.6 927,653 + Atu3831 0.59 +0.4 927,673 - Atu3831 0.61 -0.3 927,683 - Atu3831 0.62 -0.1 927,745 + Atu3831 0.67 +1.1 927,787 + Atu3831 0.71 +0.0 927,791 + Atu3831 0.71 -0.0 927,797 - Atu3831 0.72 +1.1 927,853 + Atu3831 0.76 -1.2 927,896 + Atu3831 0.80 -0.1 927,896 + Atu3831 0.80 -1.2 927,911 + Atu3831 0.81 -0.7 927,916 + Atu3831 0.82 -0.1 927,924 - Atu3831 0.82 +0.6 927,926 + Atu3831 0.82 +0.2 927,965 - Atu3831 0.86 +0.3 927,995 - Atu3831 0.88 -0.1 928,006 + Atu3831 0.89 -0.0 928,009 - Atu3831 0.89 +0.1 928,014 - Atu3831 0.90 +0.9 928,014 - Atu3831 0.90 +1.0 928,037 + +1.0 928,204 - +0.0 928,212 + -0.6 928,222 + -0.2 928,230 - +0.6 928,374 + -2.4 928,424 + +0.7 928,833 + Atu3832 0.32 -0.8 928,883 - Atu3832 0.35 +1.1 929,223 - Atu3832 0.57 +0.8 929,312 + Atu3832 0.63 -1.1 929,312 + Atu3832 0.63 +0.5 929,314 + Atu3832 0.63 +0.1 929,314 + Atu3832 0.63 -0.7 929,314 + Atu3832 0.63 +0.8 929,314 + Atu3832 0.63 +1.1 929,314 + Atu3832 0.63 -1.1 929,314 + Atu3832 0.63 +0.9 929,314 + Atu3832 0.63 +0.3 929,321 - Atu3832 0.63 -1.1 929,321 - Atu3832 0.63 +1.6 929,322 - Atu3832 0.63 -1.4 929,322 - Atu3832 0.63 +0.5 929,322 - Atu3832 0.63 +1.4 929,332 - Atu3832 0.64 +1.8 929,332 - Atu3832 0.64 +0.6 929,350 + Atu3832 0.65 +0.6 929,350 + Atu3832 0.65 -1.2 929,369 + Atu3832 0.67 +0.7 929,374 + Atu3832 0.67 +1.4 929,415 - Atu3832 0.70 +1.1 929,422 - Atu3832 0.70 -1.6 929,438 + Atu3832 0.71 +0.6 929,662 - Atu3832 0.86 -0.5 929,673 - Atu3832 0.86 -0.4 929,760 + -1.2 929,793 - -0.5 929,888 + +0.3 929,960 - +0.0 930,046 + +0.3 930,128 + Atu3833 0.15 +0.2 930,157 + Atu3833 0.20 +1.3 930,256 - Atu3833 0.39 +1.3 930,256 - Atu3833 0.39 +0.6 930,280 - Atu3833 0.43 -2.1 930,340 + Atu3833 0.54 +0.1 930,340 + Atu3833 0.54 +2.6 930,340 + Atu3833 0.54 -1.0 930,456 - Atu3833 0.76 +0.4 930,456 - Atu3833 0.76 +0.4 930,529 - Atu3833 0.89 -0.4 930,537 + -2.2 930,540 - -0.6 930,666 - -0.0 930,846 - Atu3834 0.35 +1.1
Or see this region's nucleotide sequence