Strain Fitness in Agrobacterium fabrum C58 around Atu5459

Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5458 and Atu5459 are separated by 24 nucleotidesAtu5459 and Atu5460 are separated by 83 nucleotides Atu5458: Atu5458 - isomerase/lactonizing enzyme, at 450,316 to 451,482 Atu5458 Atu5459: Atu5459 - ABC transporter substrate binding protein (sugar), at 451,507 to 452,778 Atu5459 Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788 Atu5460 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 450.513 kb on + strand, within Atu5458at 450.514 kb on + strand, within Atu5458at 450.558 kb on + strand, within Atu5458at 450.566 kb on - strand, within Atu5458at 450.605 kb on + strand, within Atu5458at 450.651 kb on + strand, within Atu5458at 450.659 kb on - strand, within Atu5458at 450.713 kb on + strand, within Atu5458at 450.772 kb on + strand, within Atu5458at 450.778 kb on - strand, within Atu5458at 450.793 kb on - strand, within Atu5458at 450.803 kb on - strand, within Atu5458at 450.851 kb on + strand, within Atu5458at 450.955 kb on + strand, within Atu5458at 450.963 kb on - strand, within Atu5458at 451.006 kb on + strand, within Atu5458at 451.021 kb on - strand, within Atu5458at 451.021 kb on - strand, within Atu5458at 451.041 kb on + strand, within Atu5458at 451.188 kb on + strand, within Atu5458at 451.194 kb on - strand, within Atu5458at 451.255 kb on - strand, within Atu5458at 451.285 kb on - strand, within Atu5458at 451.329 kb on - strand, within Atu5458at 451.410 kb on - strandat 451.444 kb on - strandat 451.444 kb on - strandat 451.452 kb on + strandat 451.531 kb on + strandat 451.587 kb on + strandat 451.595 kb on - strandat 451.637 kb on - strand, within Atu5459at 451.798 kb on + strand, within Atu5459at 451.823 kb on + strand, within Atu5459at 451.826 kb on - strand, within Atu5459at 451.831 kb on - strand, within Atu5459at 451.905 kb on + strand, within Atu5459at 451.906 kb on + strand, within Atu5459at 451.907 kb on + strand, within Atu5459at 451.913 kb on - strand, within Atu5459at 451.951 kb on + strand, within Atu5459at 452.022 kb on + strand, within Atu5459at 452.070 kb on + strand, within Atu5459at 452.070 kb on + strand, within Atu5459at 452.089 kb on + strand, within Atu5459at 452.159 kb on - strand, within Atu5459at 452.200 kb on + strand, within Atu5459at 452.208 kb on - strand, within Atu5459at 452.217 kb on + strand, within Atu5459at 452.259 kb on - strand, within Atu5459at 452.318 kb on + strand, within Atu5459at 452.326 kb on - strand, within Atu5459at 452.327 kb on - strand, within Atu5459at 452.367 kb on + strand, within Atu5459at 452.593 kb on - strand, within Atu5459at 452.744 kb on - strandat 452.751 kb on + strandat 452.772 kb on + strandat 452.788 kb on + strandat 452.807 kb on + strandat 452.824 kb on + strandat 452.830 kb on - strandat 452.935 kb on + strandat 452.935 kb on + strandat 452.943 kb on - strandat 452.966 kb on - strand, within Atu5460at 452.966 kb on - strand, within Atu5460at 452.966 kb on - strand, within Atu5460at 453.031 kb on - strand, within Atu5460at 453.071 kb on + strand, within Atu5460at 453.073 kb on + strand, within Atu5460at 453.082 kb on - strand, within Atu5460at 453.118 kb on + strand, within Atu5460at 453.124 kb on + strand, within Atu5460at 453.124 kb on + strand, within Atu5460at 453.134 kb on + strand, within Atu5460at 453.134 kb on + strand, within Atu5460at 453.163 kb on + strand, within Atu5460at 453.232 kb on - strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.242 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.269 kb on + strand, within Atu5460at 453.354 kb on - strand, within Atu5460at 453.412 kb on - strand, within Atu5460at 453.463 kb on - strand, within Atu5460at 453.510 kb on - strand, within Atu5460at 453.564 kb on - strand, within Atu5460at 453.578 kb on + strand, within Atu5460at 453.578 kb on + strand, within Atu5460at 453.586 kb on - strand, within Atu5460at 453.642 kb on + strand, within Atu5460at 453.672 kb on - strand, within Atu5460at 453.717 kb on + strandat 453.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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450,513 + Atu5458 0.17 -0.1
450,514 + Atu5458 0.17 +0.4
450,558 + Atu5458 0.21 -3.0
450,566 - Atu5458 0.21 +0.6
450,605 + Atu5458 0.25 +2.5
450,651 + Atu5458 0.29 -0.8
450,659 - Atu5458 0.29 +0.4
450,713 + Atu5458 0.34 +1.4
450,772 + Atu5458 0.39 +0.6
450,778 - Atu5458 0.40 +1.6
450,793 - Atu5458 0.41 +0.3
450,803 - Atu5458 0.42 +0.9
450,851 + Atu5458 0.46 +2.0
450,955 + Atu5458 0.55 -0.1
450,963 - Atu5458 0.55 -0.4
451,006 + Atu5458 0.59 +0.5
451,021 - Atu5458 0.60 +0.3
451,021 - Atu5458 0.60 -2.1
451,041 + Atu5458 0.62 +0.5
451,188 + Atu5458 0.75 +0.3
451,194 - Atu5458 0.75 +0.6
451,255 - Atu5458 0.80 -1.3
451,285 - Atu5458 0.83 -3.6
451,329 - Atu5458 0.87 -0.4
451,410 - +0.7
451,444 - -0.0
451,444 - -0.4
451,452 + +0.0
451,531 + -0.2
451,587 + +0.1
451,595 - +0.4
451,637 - Atu5459 0.10 -0.7
451,798 + Atu5459 0.23 -1.1
451,823 + Atu5459 0.25 +1.1
451,826 - Atu5459 0.25 +0.4
451,831 - Atu5459 0.25 +0.3
451,905 + Atu5459 0.31 +2.9
451,906 + Atu5459 0.31 +2.1
451,907 + Atu5459 0.31 -1.4
451,913 - Atu5459 0.32 -0.4
451,951 + Atu5459 0.35 -0.0
452,022 + Atu5459 0.40 +1.2
452,070 + Atu5459 0.44 -0.4
452,070 + Atu5459 0.44 -0.8
452,089 + Atu5459 0.46 -0.5
452,159 - Atu5459 0.51 +2.0
452,200 + Atu5459 0.54 +0.4
452,208 - Atu5459 0.55 -0.4
452,217 + Atu5459 0.56 +0.3
452,259 - Atu5459 0.59 +3.0
452,318 + Atu5459 0.64 -0.5
452,326 - Atu5459 0.64 -0.1
452,327 - Atu5459 0.64 -0.4
452,367 + Atu5459 0.68 +0.9
452,593 - Atu5459 0.85 -0.3
452,744 - +1.4
452,751 + +0.0
452,772 + +0.1
452,788 + -0.7
452,807 + -2.6
452,824 + -0.3
452,830 - +0.2
452,935 + +1.0
452,935 + -0.5
452,943 - +0.6
452,966 - Atu5460 0.11 +0.3
452,966 - Atu5460 0.11 -0.5
452,966 - Atu5460 0.11 -0.4
453,031 - Atu5460 0.18 -0.3
453,071 + Atu5460 0.23 +0.2
453,073 + Atu5460 0.23 -1.0
453,082 - Atu5460 0.24 +0.9
453,118 + Atu5460 0.28 -0.0
453,124 + Atu5460 0.28 -2.8
453,124 + Atu5460 0.28 +1.1
453,134 + Atu5460 0.29 -0.7
453,134 + Atu5460 0.29 -2.4
453,163 + Atu5460 0.32 -0.4
453,232 - Atu5460 0.40 -0.3
453,239 + Atu5460 0.41 -0.1
453,239 + Atu5460 0.41 -0.1
453,239 + Atu5460 0.41 +0.7
453,239 + Atu5460 0.41 -1.3
453,239 + Atu5460 0.41 -0.2
453,239 + Atu5460 0.41 +0.6
453,239 + Atu5460 0.41 +0.8
453,239 + Atu5460 0.41 -0.7
453,239 + Atu5460 0.41 -0.6
453,239 + Atu5460 0.41 -0.6
453,239 + Atu5460 0.41 -1.1
453,239 + Atu5460 0.41 -0.0
453,239 + Atu5460 0.41 -0.0
453,239 + Atu5460 0.41 -1.3
453,242 - Atu5460 0.41 +0.7
453,247 - Atu5460 0.42 +1.8
453,247 - Atu5460 0.42 +0.1
453,247 - Atu5460 0.42 -1.4
453,247 - Atu5460 0.42 +0.2
453,247 - Atu5460 0.42 -1.1
453,247 - Atu5460 0.42 -0.8
453,247 - Atu5460 0.42 -0.4
453,247 - Atu5460 0.42 +1.2
453,247 - Atu5460 0.42 -1.3
453,247 - Atu5460 0.42 -0.6
453,247 - Atu5460 0.42 -0.4
453,269 + Atu5460 0.44 +2.3
453,354 - Atu5460 0.53 -0.3
453,412 - Atu5460 0.59 -0.4
453,463 - Atu5460 0.65 +0.1
453,510 - Atu5460 0.70 +0.9
453,564 - Atu5460 0.76 -0.2
453,578 + Atu5460 0.77 -0.6
453,578 + Atu5460 0.77 +0.3
453,586 - Atu5460 0.78 +0.4
453,642 + Atu5460 0.84 -0.2
453,672 - Atu5460 0.87 -0.2
453,717 + +0.4
453,726 + -2.6

Or see this region's nucleotide sequence