Strain Fitness in Agrobacterium fabrum C58 around Atu5183

Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5182 and Atu5183 are separated by 85 nucleotidesAtu5183 and Atu5184 are separated by 191 nucleotides Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968 Atu5182 Atu5183: Atu5183 - hypothetical protein, at 180,054 to 180,650 Atu5183 Atu5184: Atu5184 - LysR family transcriptional regulator, at 180,842 to 181,771 Atu5184 Position (kb) 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 179.139 kb on - strand, within Atu5182at 179.142 kb on + strand, within Atu5182at 179.142 kb on + strand, within Atu5182at 179.150 kb on - strand, within Atu5182at 179.150 kb on - strand, within Atu5182at 179.165 kb on - strand, within Atu5182at 179.165 kb on - strand, within Atu5182at 179.227 kb on + strand, within Atu5182at 179.235 kb on - strand, within Atu5182at 179.235 kb on - strand, within Atu5182at 179.263 kb on - strand, within Atu5182at 179.265 kb on + strand, within Atu5182at 179.267 kb on - strand, within Atu5182at 179.314 kb on + strand, within Atu5182at 179.373 kb on - strand, within Atu5182at 179.494 kb on - strand, within Atu5182at 179.506 kb on + strand, within Atu5182at 179.506 kb on + strand, within Atu5182at 179.506 kb on + strand, within Atu5182at 179.514 kb on - strand, within Atu5182at 179.547 kb on + strand, within Atu5182at 179.557 kb on - strand, within Atu5182at 179.585 kb on + strand, within Atu5182at 179.604 kb on + strand, within Atu5182at 179.619 kb on + strand, within Atu5182at 179.693 kb on - strand, within Atu5182at 179.715 kb on - strand, within Atu5182at 179.734 kb on - strand, within Atu5182at 179.768 kb on + strand, within Atu5182at 179.769 kb on + strand, within Atu5182at 179.794 kb on - strand, within Atu5182at 179.817 kb on + strand, within Atu5182at 179.889 kb on + strandat 179.897 kb on - strandat 179.921 kb on + strandat 180.042 kb on - strandat 180.050 kb on - strandat 180.094 kb on + strandat 180.231 kb on - strand, within Atu5183at 180.247 kb on - strand, within Atu5183at 180.301 kb on + strand, within Atu5183at 180.355 kb on + strand, within Atu5183at 180.358 kb on + strand, within Atu5183at 180.471 kb on + strand, within Atu5183at 180.479 kb on - strand, within Atu5183at 180.485 kb on + strand, within Atu5183at 180.496 kb on + strand, within Atu5183at 180.536 kb on + strand, within Atu5183at 180.561 kb on - strand, within Atu5183at 180.627 kb on - strandat 180.644 kb on - strandat 180.646 kb on + strandat 180.652 kb on + strandat 180.659 kb on + strandat 180.667 kb on - strandat 180.858 kb on + strandat 180.859 kb on + strandat 180.917 kb on + strandat 180.925 kb on - strandat 181.028 kb on - strand, within Atu5184at 181.044 kb on + strand, within Atu5184at 181.044 kb on + strand, within Atu5184at 181.044 kb on + strand, within Atu5184at 181.052 kb on - strand, within Atu5184at 181.129 kb on + strand, within Atu5184at 181.164 kb on + strand, within Atu5184at 181.182 kb on - strand, within Atu5184at 181.201 kb on + strand, within Atu5184at 181.209 kb on - strand, within Atu5184at 181.320 kb on - strand, within Atu5184at 181.320 kb on - strand, within Atu5184at 181.482 kb on + strand, within Atu5184at 181.487 kb on + strand, within Atu5184at 181.549 kb on + strand, within Atu5184at 181.557 kb on - strand, within Atu5184at 181.572 kb on - strand, within Atu5184at 181.629 kb on + strand, within Atu5184at 181.635 kb on - strand, within Atu5184at 181.635 kb on - strand, within Atu5184

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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179,139 - Atu5182 0.11 +0.7
179,142 + Atu5182 0.12 -1.0
179,142 + Atu5182 0.12 +0.4
179,150 - Atu5182 0.12 -0.1
179,150 - Atu5182 0.12 -2.5
179,165 - Atu5182 0.14 +1.0
179,165 - Atu5182 0.14 -1.0
179,227 + Atu5182 0.21 +0.5
179,235 - Atu5182 0.22 -0.6
179,235 - Atu5182 0.22 +0.2
179,263 - Atu5182 0.25 +0.2
179,265 + Atu5182 0.25 -0.5
179,267 - Atu5182 0.25 -0.9
179,314 + Atu5182 0.30 -0.0
179,373 - Atu5182 0.36 +0.9
179,494 - Atu5182 0.49 -0.3
179,506 + Atu5182 0.51 -0.9
179,506 + Atu5182 0.51 -0.2
179,506 + Atu5182 0.51 -1.7
179,514 - Atu5182 0.51 -0.8
179,547 + Atu5182 0.55 +0.8
179,557 - Atu5182 0.56 +1.7
179,585 + Atu5182 0.59 -0.5
179,604 + Atu5182 0.61 +0.9
179,619 + Atu5182 0.63 +0.7
179,693 - Atu5182 0.71 -0.6
179,715 - Atu5182 0.73 -0.3
179,734 - Atu5182 0.75 -0.4
179,768 + Atu5182 0.79 -0.4
179,769 + Atu5182 0.79 +0.6
179,794 - Atu5182 0.81 -0.0
179,817 + Atu5182 0.84 +1.4
179,889 + -0.2
179,897 - +0.9
179,921 + +0.3
180,042 - +0.0
180,050 - +2.0
180,094 + -1.3
180,231 - Atu5183 0.30 -0.8
180,247 - Atu5183 0.32 +0.7
180,301 + Atu5183 0.41 -0.3
180,355 + Atu5183 0.50 -0.8
180,358 + Atu5183 0.51 +1.3
180,471 + Atu5183 0.70 +0.8
180,479 - Atu5183 0.71 -0.4
180,485 + Atu5183 0.72 -2.4
180,496 + Atu5183 0.74 -0.1
180,536 + Atu5183 0.81 -1.1
180,561 - Atu5183 0.85 -0.2
180,627 - +0.6
180,644 - +1.2
180,646 + -1.0
180,652 + +1.2
180,659 + -1.0
180,667 - +0.2
180,858 + +0.3
180,859 + +0.3
180,917 + -0.8
180,925 - -1.0
181,028 - Atu5184 0.20 -3.3
181,044 + Atu5184 0.22 +2.3
181,044 + Atu5184 0.22 -2.4
181,044 + Atu5184 0.22 -0.6
181,052 - Atu5184 0.23 -0.7
181,129 + Atu5184 0.31 -0.1
181,164 + Atu5184 0.35 +0.5
181,182 - Atu5184 0.37 +0.2
181,201 + Atu5184 0.39 -1.1
181,209 - Atu5184 0.39 +0.3
181,320 - Atu5184 0.51 -1.7
181,320 - Atu5184 0.51 +0.6
181,482 + Atu5184 0.69 +0.8
181,487 + Atu5184 0.69 -0.7
181,549 + Atu5184 0.76 +0.4
181,557 - Atu5184 0.77 +0.7
181,572 - Atu5184 0.78 +0.3
181,629 + Atu5184 0.85 -1.3
181,635 - Atu5184 0.85 -0.1
181,635 - Atu5184 0.85 +0.3

Or see this region's nucleotide sequence