Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5156 and Atu5157 are separated by 220 nucleotides Atu5157 and Atu5158 are separated by 178 nucleotides Atu5158 and Atu5159 are separated by 334 nucleotides
Atu5156: Atu5156 - short chain dehydrogenase dehydrogenases, at 156,591 to 157,337
Atu5156
Atu5157: Atu5157 - hypothetical protein, at 157,558 to 157,887
Atu5157
Atu5158: Atu5158 - hypothetical protein, at 158,066 to 158,410
Atu5158
Atu5159: Atu5159 - hypothetical protein, at 158,745 to 159,149
Atu5159
Position (kb) 158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.153 kb on + strand, within Atu5156 at 157.163 kb on + strand, within Atu5156 at 157.212 kb on + strand, within Atu5156 at 157.220 kb on - strand, within Atu5156 at 157.222 kb on + strand, within Atu5156 at 157.230 kb on - strand, within Atu5156 at 157.230 kb on - strand, within Atu5156 at 157.270 kb on + strand at 157.270 kb on + strand at 157.284 kb on + strand at 157.289 kb on + strand at 157.289 kb on + strand at 157.297 kb on - strand at 157.297 kb on - strand at 157.297 kb on - strand at 157.305 kb on + strand at 157.336 kb on - strand at 157.380 kb on + strand at 157.381 kb on + strand at 157.417 kb on + strand at 157.427 kb on + strand at 157.494 kb on - strand at 157.519 kb on - strand at 157.520 kb on + strand at 157.528 kb on + strand at 157.555 kb on + strand at 157.562 kb on - strand at 157.707 kb on - strand, within Atu5157 at 157.727 kb on + strand, within Atu5157 at 157.764 kb on + strand, within Atu5157 at 157.831 kb on - strand, within Atu5157 at 157.959 kb on - strand at 158.046 kb on - strand at 158.097 kb on + strand at 158.127 kb on + strand, within Atu5158 at 158.156 kb on - strand, within Atu5158 at 158.236 kb on + strand, within Atu5158 at 158.265 kb on - strand, within Atu5158 at 158.271 kb on + strand, within Atu5158 at 158.281 kb on + strand, within Atu5158 at 158.307 kb on + strand, within Atu5158 at 158.362 kb on - strand, within Atu5158 at 158.456 kb on + strand at 158.486 kb on - strand at 158.491 kb on - strand at 158.507 kb on - strand at 158.557 kb on + strand at 158.557 kb on + strand at 158.565 kb on - strand at 158.567 kb on + strand at 158.580 kb on - strand at 158.657 kb on - strand at 158.657 kb on - strand at 158.720 kb on + strand at 158.777 kb on + strand at 158.797 kb on + strand, within Atu5159 at 158.805 kb on - strand, within Atu5159 at 158.853 kb on - strand, within Atu5159 at 158.858 kb on + strand, within Atu5159 at 158.893 kb on + strand, within Atu5159 at 159.016 kb on - strand, within Atu5159 at 159.102 kb on - strand, within Atu5159 at 159.148 kb on + strand at 159.151 kb on - strand at 159.162 kb on + strand at 159.178 kb on - strand at 159.179 kb on - strand at 159.262 kb on + strand at 159.314 kb on + strand at 159.317 kb on - strand at 159.322 kb on - strand at 159.354 kb on + strand at 159.359 kb on - strand at 159.361 kb on + strand at 159.361 kb on + strand at 159.362 kb on - strand at 159.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 157,153 + Atu5156 0.75 +1.3 157,163 + Atu5156 0.77 +0.5 157,212 + Atu5156 0.83 -2.6 157,220 - Atu5156 0.84 +0.8 157,222 + Atu5156 0.84 -0.3 157,230 - Atu5156 0.86 -1.6 157,230 - Atu5156 0.86 -2.4 157,270 + +0.7 157,270 + +0.1 157,284 + +2.0 157,289 + -0.8 157,289 + +0.3 157,297 - -0.4 157,297 - +1.0 157,297 - -1.0 157,305 + -0.1 157,336 - -3.1 157,380 + +1.6 157,381 + +0.4 157,417 + -0.9 157,427 + -0.5 157,494 - +0.3 157,519 - +0.6 157,520 + +0.0 157,528 + +0.7 157,555 + -3.2 157,562 - +0.1 157,707 - Atu5157 0.45 +0.4 157,727 + Atu5157 0.51 -2.2 157,764 + Atu5157 0.62 -1.6 157,831 - Atu5157 0.83 -2.3 157,959 - -2.0 158,046 - -0.0 158,097 + -0.4 158,127 + Atu5158 0.18 -2.5 158,156 - Atu5158 0.26 -0.1 158,236 + Atu5158 0.49 +0.9 158,265 - Atu5158 0.58 +0.8 158,271 + Atu5158 0.59 -3.1 158,281 + Atu5158 0.62 +3.2 158,307 + Atu5158 0.70 -0.3 158,362 - Atu5158 0.86 +0.6 158,456 + +0.8 158,486 - -2.5 158,491 - +0.3 158,507 - -1.0 158,557 + -3.0 158,557 + -0.3 158,565 - +1.2 158,567 + +0.4 158,580 - +0.0 158,657 - +0.4 158,657 - -0.5 158,720 + +0.6 158,777 + -1.0 158,797 + Atu5159 0.13 -0.4 158,805 - Atu5159 0.15 -3.1 158,853 - Atu5159 0.27 +0.7 158,858 + Atu5159 0.28 +1.2 158,893 + Atu5159 0.37 -0.0 159,016 - Atu5159 0.67 +0.5 159,102 - Atu5159 0.88 +0.5 159,148 + +0.5 159,151 - -2.7 159,162 + -0.8 159,178 - -1.9 159,179 - -0.3 159,262 + -2.2 159,314 + -2.8 159,317 - -1.3 159,322 - +1.0 159,354 + -1.2 159,359 - -1.2 159,361 + -0.3 159,361 + +0.7 159,362 - +1.2 159,391 - +0.9
Or see this region's nucleotide sequence