Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3835 and Atu3836 are separated by 290 nucleotides Atu3836 and Atu3837 are separated by 44 nucleotides Atu3837 and Atu3838 are separated by 73 nucleotides
Atu3835: Atu3835 - hypothetical protein, at 931,282 to 932,067
Atu3835
Atu3836: Atu3836 - hypothetical protein, at 932,358 to 932,936
Atu3836
Atu3837: Atu3837 - hypothetical protein, at 932,981 to 933,235
Atu3837
Atu3838: Atu3838 - hypothetical protein, at 933,309 to 933,743
Atu3838
Position (kb) 932
933 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 931.377 kb on - strand, within Atu3835 at 931.437 kb on - strand, within Atu3835 at 931.648 kb on - strand, within Atu3835 at 931.837 kb on + strand, within Atu3835 at 931.950 kb on + strand, within Atu3835 at 932.093 kb on + strand at 932.094 kb on - strand at 932.171 kb on - strand at 932.209 kb on + strand at 932.278 kb on + strand at 932.285 kb on - strand at 932.391 kb on - strand at 932.437 kb on - strand, within Atu3836 at 932.486 kb on + strand, within Atu3836 at 932.486 kb on + strand, within Atu3836 at 932.486 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.519 kb on + strand, within Atu3836 at 932.527 kb on - strand, within Atu3836 at 932.527 kb on - strand, within Atu3836 at 932.527 kb on - strand, within Atu3836 at 932.529 kb on - strand, within Atu3836 at 932.644 kb on - strand, within Atu3836 at 932.717 kb on + strand, within Atu3836 at 932.717 kb on + strand, within Atu3836 at 932.725 kb on - strand, within Atu3836 at 932.725 kb on - strand, within Atu3836 at 932.725 kb on - strand, within Atu3836 at 932.725 kb on - strand, within Atu3836 at 932.738 kb on + strand, within Atu3836 at 932.738 kb on + strand, within Atu3836 at 932.738 kb on + strand, within Atu3836 at 932.746 kb on - strand, within Atu3836 at 932.748 kb on + strand, within Atu3836 at 932.756 kb on - strand, within Atu3836 at 932.787 kb on + strand, within Atu3836 at 932.787 kb on + strand, within Atu3836 at 932.806 kb on + strand, within Atu3836 at 932.813 kb on + strand, within Atu3836 at 932.813 kb on + strand, within Atu3836 at 932.827 kb on - strand, within Atu3836 at 932.849 kb on + strand, within Atu3836 at 932.888 kb on + strand at 932.888 kb on + strand at 932.955 kb on + strand at 932.961 kb on - strand at 932.980 kb on - strand at 933.004 kb on - strand at 933.068 kb on + strand, within Atu3837 at 933.100 kb on + strand, within Atu3837 at 933.141 kb on + strand, within Atu3837 at 933.141 kb on - strand, within Atu3837 at 933.143 kb on + strand, within Atu3837 at 933.143 kb on + strand, within Atu3837 at 933.143 kb on + strand, within Atu3837 at 933.143 kb on + strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.151 kb on - strand, within Atu3837 at 933.239 kb on + strand at 933.247 kb on - strand at 933.274 kb on + strand at 933.291 kb on + strand at 933.372 kb on + strand, within Atu3838 at 933.390 kb on - strand, within Atu3838 at 933.454 kb on + strand, within Atu3838 at 933.609 kb on + strand, within Atu3838 at 933.617 kb on - strand, within Atu3838 at 933.643 kb on + strand, within Atu3838 at 933.676 kb on - strand, within Atu3838 at 933.682 kb on - strand, within Atu3838 at 933.683 kb on - strand, within Atu3838 at 933.683 kb on - strand, within Atu3838 at 933.738 kb on + strand at 933.751 kb on - strand at 933.832 kb on - strand at 933.853 kb on + strand at 933.884 kb on - strand at 933.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 931,377 - Atu3835 0.12 -0.2 931,437 - Atu3835 0.20 +0.5 931,648 - Atu3835 0.47 +0.0 931,837 + Atu3835 0.71 -0.4 931,950 + Atu3835 0.85 +0.3 932,093 + +1.4 932,094 - -0.2 932,171 - +1.2 932,209 + +0.2 932,278 + -1.0 932,285 - +1.1 932,391 - +1.2 932,437 - Atu3836 0.14 -0.1 932,486 + Atu3836 0.22 -0.9 932,486 + Atu3836 0.22 +0.6 932,486 + Atu3836 0.22 -0.5 932,519 + Atu3836 0.28 -2.0 932,519 + Atu3836 0.28 +1.4 932,519 + Atu3836 0.28 +0.2 932,519 + Atu3836 0.28 -0.1 932,519 + Atu3836 0.28 +4.2 932,519 + Atu3836 0.28 +1.0 932,519 + Atu3836 0.28 +1.0 932,519 + Atu3836 0.28 +2.0 932,527 - Atu3836 0.29 +0.2 932,527 - Atu3836 0.29 -3.6 932,527 - Atu3836 0.29 -1.3 932,529 - Atu3836 0.30 -3.4 932,644 - Atu3836 0.49 +0.3 932,717 + Atu3836 0.62 +0.4 932,717 + Atu3836 0.62 -2.3 932,725 - Atu3836 0.63 +0.6 932,725 - Atu3836 0.63 -2.1 932,725 - Atu3836 0.63 -0.6 932,725 - Atu3836 0.63 -0.3 932,738 + Atu3836 0.66 +0.2 932,738 + Atu3836 0.66 -1.0 932,738 + Atu3836 0.66 +0.5 932,746 - Atu3836 0.67 -1.7 932,748 + Atu3836 0.67 +0.9 932,756 - Atu3836 0.69 +0.2 932,787 + Atu3836 0.74 +2.8 932,787 + Atu3836 0.74 -3.0 932,806 + Atu3836 0.77 +1.0 932,813 + Atu3836 0.79 +1.8 932,813 + Atu3836 0.79 -0.3 932,827 - Atu3836 0.81 -0.2 932,849 + Atu3836 0.85 -1.1 932,888 + -0.1 932,888 + -0.8 932,955 + +1.6 932,961 - -4.5 932,980 - +0.5 933,004 - -0.0 933,068 + Atu3837 0.34 -3.3 933,100 + Atu3837 0.47 -1.8 933,141 + Atu3837 0.63 +2.4 933,141 - Atu3837 0.63 -0.1 933,143 + Atu3837 0.64 -0.6 933,143 + Atu3837 0.64 +0.4 933,143 + Atu3837 0.64 +0.4 933,143 + Atu3837 0.64 +0.5 933,151 - Atu3837 0.67 +1.0 933,151 - Atu3837 0.67 +2.0 933,151 - Atu3837 0.67 +0.5 933,151 - Atu3837 0.67 -1.5 933,151 - Atu3837 0.67 +1.2 933,151 - Atu3837 0.67 +0.3 933,151 - Atu3837 0.67 -2.7 933,239 + -0.8 933,247 - +0.3 933,274 + +0.4 933,291 + +0.2 933,372 + Atu3838 0.14 +1.3 933,390 - Atu3838 0.19 -0.2 933,454 + Atu3838 0.33 +0.1 933,609 + Atu3838 0.69 -1.6 933,617 - Atu3838 0.71 -2.3 933,643 + Atu3838 0.77 -0.3 933,676 - Atu3838 0.84 -0.3 933,682 - Atu3838 0.86 -1.0 933,683 - Atu3838 0.86 +0.2 933,683 - Atu3838 0.86 -0.2 933,738 + +0.9 933,751 - +0.1 933,832 - -0.6 933,853 + +0.4 933,884 - -3.1 933,884 - -1.1
Or see this region's nucleotide sequence