Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3225 and Atu3226 are separated by 17 nucleotides Atu3226 and Atu3227 are separated by 217 nucleotides Atu3227 and Atu3228 are separated by 7 nucleotides
Atu3225: Atu3225 - ABC transporter permease, at 239,437 to 240,417
Atu3225
Atu3226: Atu3226 - GntR family transcriptional regulator, at 240,435 to 241,169
Atu3226
Atu3227: Atu3227 - AraC family transcriptional regulator, at 241,387 to 242,325
Atu3227
Atu3228: Atu3228 - DNA polymerase III subunit alpha, at 242,333 to 245,608
Atu3228
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.404 kb on - strand at 240.487 kb on + strand at 240.529 kb on + strand, within Atu3226 at 240.549 kb on - strand, within Atu3226 at 240.551 kb on + strand, within Atu3226 at 240.597 kb on + strand, within Atu3226 at 240.597 kb on + strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.609 kb on + strand, within Atu3226 at 240.733 kb on + strand, within Atu3226 at 240.807 kb on + strand, within Atu3226 at 240.927 kb on + strand, within Atu3226 at 241.160 kb on + strand at 241.164 kb on + strand at 241.179 kb on + strand at 241.201 kb on - strand at 241.352 kb on + strand at 241.569 kb on - strand, within Atu3227 at 241.604 kb on + strand, within Atu3227 at 241.612 kb on - strand, within Atu3227 at 241.612 kb on - strand, within Atu3227 at 241.624 kb on - strand, within Atu3227 at 241.919 kb on + strand, within Atu3227 at 241.920 kb on - strand, within Atu3227 at 241.924 kb on + strand, within Atu3227 at 241.937 kb on - strand, within Atu3227 at 242.040 kb on + strand, within Atu3227 at 242.176 kb on - strand, within Atu3227 at 242.222 kb on - strand, within Atu3227 at 242.597 kb on + strand at 242.602 kb on + strand at 242.659 kb on - strand at 242.661 kb on + strand, within Atu3228 at 242.736 kb on - strand, within Atu3228 at 242.828 kb on - strand, within Atu3228 at 242.828 kb on - strand, within Atu3228 at 242.828 kb on - strand, within Atu3228 at 242.839 kb on + strand, within Atu3228 at 242.847 kb on - strand, within Atu3228 at 242.847 kb on - strand, within Atu3228 at 242.852 kb on - strand, within Atu3228 at 242.855 kb on + strand, within Atu3228 at 242.861 kb on + strand, within Atu3228 at 242.894 kb on - strand, within Atu3228 at 242.911 kb on + strand, within Atu3228 at 243.172 kb on + strand, within Atu3228 at 243.187 kb on + strand, within Atu3228 at 243.195 kb on - strand, within Atu3228 at 243.252 kb on + strand, within Atu3228
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 240,404 - +0.8 240,487 + +0.3 240,529 + Atu3226 0.13 +1.6 240,549 - Atu3226 0.16 +1.6 240,551 + Atu3226 0.16 +2.0 240,597 + Atu3226 0.22 -0.2 240,597 + Atu3226 0.22 -1.0 240,605 - Atu3226 0.23 +0.0 240,605 - Atu3226 0.23 +0.2 240,605 - Atu3226 0.23 +1.4 240,609 + Atu3226 0.24 +0.8 240,733 + Atu3226 0.41 -2.4 240,807 + Atu3226 0.51 +0.0 240,927 + Atu3226 0.67 +0.5 241,160 + -0.4 241,164 + +0.0 241,179 + -0.4 241,201 - +0.9 241,352 + +0.7 241,569 - Atu3227 0.19 +0.9 241,604 + Atu3227 0.23 +2.4 241,612 - Atu3227 0.24 -1.0 241,612 - Atu3227 0.24 -0.2 241,624 - Atu3227 0.25 -0.8 241,919 + Atu3227 0.57 -1.3 241,920 - Atu3227 0.57 -1.2 241,924 + Atu3227 0.57 +0.3 241,937 - Atu3227 0.59 -2.6 242,040 + Atu3227 0.70 +1.0 242,176 - Atu3227 0.84 +2.8 242,222 - Atu3227 0.89 +0.5 242,597 + -1.1 242,602 + +1.4 242,659 - -1.3 242,661 + Atu3228 0.10 +1.3 242,736 - Atu3228 0.12 +1.8 242,828 - Atu3228 0.15 -0.7 242,828 - Atu3228 0.15 +2.4 242,828 - Atu3228 0.15 +0.3 242,839 + Atu3228 0.15 +0.9 242,847 - Atu3228 0.16 -0.5 242,847 - Atu3228 0.16 -3.1 242,852 - Atu3228 0.16 +1.7 242,855 + Atu3228 0.16 +0.6 242,861 + Atu3228 0.16 -0.6 242,894 - Atu3228 0.17 -0.9 242,911 + Atu3228 0.18 -2.6 243,172 + Atu3228 0.26 -0.1 243,187 + Atu3228 0.26 -0.5 243,195 - Atu3228 0.26 -1.6 243,252 + Atu3228 0.28 -2.9
Or see this region's nucleotide sequence