Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0492 and Atu0493 are separated by 107 nucleotides Atu0493 and Atu0494 are separated by 259 nucleotides Atu0494 and Atu0495 are separated by 34 nucleotides Atu0495 and Atu0496 are separated by 22 nucleotides
Atu0492: Atu0492 - hypothetical protein, at 478,768 to 479,229
Atu0492
Atu0493: Atu0493 - hypothetical protein, at 479,337 to 479,840
Atu0493
Atu0494: Atu0494 - large atp-dependant helicase-related protein, at 480,100 to 482,478
Atu0494
Atu0495: Atu0495 - hypothetical protein, at 482,513 to 483,241
Atu0495
Atu0496: Atu0496 - hypothetical protein, at 483,264 to 483,701
Atu0496
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 479.119 kb on - strand, within Atu0492 at 479.149 kb on + strand, within Atu0492 at 479.157 kb on - strand, within Atu0492 at 479.157 kb on - strand, within Atu0492 at 479.196 kb on - strand at 479.243 kb on + strand at 479.261 kb on - strand at 479.262 kb on - strand at 479.284 kb on + strand at 479.335 kb on + strand at 479.340 kb on + strand at 479.398 kb on - strand, within Atu0493 at 479.532 kb on - strand, within Atu0493 at 479.545 kb on - strand, within Atu0493 at 479.613 kb on - strand, within Atu0493 at 479.623 kb on - strand, within Atu0493 at 479.814 kb on - strand at 479.856 kb on - strand at 480.125 kb on - strand at 480.228 kb on - strand at 480.295 kb on - strand at 480.386 kb on + strand, within Atu0494 at 480.386 kb on + strand, within Atu0494 at 480.539 kb on + strand, within Atu0494 at 480.539 kb on + strand, within Atu0494 at 480.547 kb on - strand, within Atu0494 at 480.649 kb on + strand, within Atu0494 at 480.739 kb on + strand, within Atu0494 at 480.768 kb on + strand, within Atu0494 at 480.785 kb on - strand, within Atu0494 at 480.878 kb on + strand, within Atu0494 at 480.904 kb on - strand, within Atu0494 at 480.962 kb on + strand, within Atu0494 at 481.043 kb on + strand, within Atu0494 at 481.193 kb on + strand, within Atu0494 at 481.208 kb on + strand, within Atu0494 at 481.225 kb on + strand, within Atu0494 at 481.274 kb on + strand, within Atu0494 at 481.294 kb on + strand, within Atu0494 at 481.294 kb on + strand, within Atu0494 at 481.294 kb on + strand, within Atu0494 at 481.302 kb on - strand, within Atu0494 at 481.312 kb on - strand, within Atu0494 at 481.331 kb on + strand, within Atu0494 at 481.354 kb on - strand, within Atu0494 at 481.374 kb on + strand, within Atu0494 at 481.394 kb on - strand, within Atu0494 at 481.477 kb on + strand, within Atu0494 at 481.558 kb on + strand, within Atu0494 at 481.568 kb on + strand, within Atu0494 at 481.607 kb on - strand, within Atu0494 at 481.665 kb on + strand, within Atu0494 at 481.896 kb on + strand, within Atu0494 at 481.912 kb on + strand, within Atu0494 at 481.912 kb on + strand, within Atu0494 at 481.912 kb on + strand, within Atu0494 at 481.915 kb on - strand, within Atu0494 at 481.997 kb on - strand, within Atu0494 at 482.079 kb on + strand, within Atu0494 at 482.135 kb on + strand, within Atu0494 at 482.143 kb on - strand, within Atu0494 at 482.153 kb on - strand, within Atu0494 at 482.228 kb on + strand, within Atu0494 at 482.228 kb on + strand, within Atu0494 at 482.236 kb on - strand, within Atu0494 at 482.239 kb on + strand, within Atu0494 at 482.248 kb on - strand at 482.431 kb on + strand at 482.521 kb on - strand at 482.627 kb on - strand, within Atu0495 at 482.668 kb on + strand, within Atu0495 at 482.697 kb on + strand, within Atu0495 at 482.839 kb on + strand, within Atu0495 at 482.931 kb on + strand, within Atu0495 at 483.126 kb on + strand, within Atu0495 at 483.134 kb on - strand, within Atu0495 at 483.198 kb on - strand at 483.213 kb on - strand at 483.316 kb on - strand, within Atu0496 at 483.364 kb on - strand, within Atu0496 at 483.385 kb on - strand, within Atu0496
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 479,119 - Atu0492 0.76 -0.1 479,149 + Atu0492 0.82 -0.3 479,157 - Atu0492 0.84 +3.8 479,157 - Atu0492 0.84 +0.0 479,196 - +2.0 479,243 + +1.0 479,261 - +0.6 479,262 - +0.4 479,284 + -1.5 479,335 + -1.1 479,340 + -2.6 479,398 - Atu0493 0.12 +1.2 479,532 - Atu0493 0.39 -0.7 479,545 - Atu0493 0.41 +0.4 479,613 - Atu0493 0.55 -0.1 479,623 - Atu0493 0.57 +0.6 479,814 - +0.0 479,856 - +0.4 480,125 - +0.2 480,228 - -0.2 480,295 - +0.7 480,386 + Atu0494 0.12 -0.4 480,386 + Atu0494 0.12 +1.2 480,539 + Atu0494 0.18 -0.6 480,539 + Atu0494 0.18 -1.3 480,547 - Atu0494 0.19 -0.3 480,649 + Atu0494 0.23 +0.9 480,739 + Atu0494 0.27 +0.8 480,768 + Atu0494 0.28 +0.0 480,785 - Atu0494 0.29 +0.1 480,878 + Atu0494 0.33 +1.5 480,904 - Atu0494 0.34 +0.5 480,962 + Atu0494 0.36 +0.4 481,043 + Atu0494 0.40 -1.5 481,193 + Atu0494 0.46 +0.7 481,208 + Atu0494 0.47 +2.1 481,225 + Atu0494 0.47 -1.1 481,274 + Atu0494 0.49 -2.5 481,294 + Atu0494 0.50 +0.2 481,294 + Atu0494 0.50 -4.1 481,294 + Atu0494 0.50 +1.0 481,302 - Atu0494 0.51 +0.5 481,312 - Atu0494 0.51 -2.2 481,331 + Atu0494 0.52 -0.3 481,354 - Atu0494 0.53 +0.8 481,374 + Atu0494 0.54 -1.5 481,394 - Atu0494 0.54 +0.5 481,477 + Atu0494 0.58 -2.3 481,558 + Atu0494 0.61 +0.7 481,568 + Atu0494 0.62 -0.2 481,607 - Atu0494 0.63 +0.0 481,665 + Atu0494 0.66 +0.9 481,896 + Atu0494 0.75 +0.8 481,912 + Atu0494 0.76 -0.7 481,912 + Atu0494 0.76 -0.0 481,912 + Atu0494 0.76 +0.5 481,915 - Atu0494 0.76 +1.2 481,997 - Atu0494 0.80 +1.2 482,079 + Atu0494 0.83 +0.8 482,135 + Atu0494 0.86 -0.1 482,143 - Atu0494 0.86 +0.7 482,153 - Atu0494 0.86 +1.0 482,228 + Atu0494 0.89 +0.3 482,228 + Atu0494 0.89 -0.2 482,236 - Atu0494 0.90 +1.8 482,239 + Atu0494 0.90 +1.7 482,248 - -0.2 482,431 + +0.2 482,521 - -0.6 482,627 - Atu0495 0.16 +0.6 482,668 + Atu0495 0.21 -2.9 482,697 + Atu0495 0.25 -1.1 482,839 + Atu0495 0.45 -0.8 482,931 + Atu0495 0.57 -2.3 483,126 + Atu0495 0.84 -0.4 483,134 - Atu0495 0.85 -2.7 483,198 - -1.1 483,213 - -0.1 483,316 - Atu0496 0.12 -0.2 483,364 - Atu0496 0.23 -1.3 483,385 - Atu0496 0.28 +0.2
Or see this region's nucleotide sequence