Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0173 and Atu0174 are separated by 85 nucleotides Atu0174 and Atu0175 are separated by 216 nucleotides Atu0175 and Atu0176 overlap by 4 nucleotides
Atu0173: Atu0173 - ABC transporter, substrate binding protein (phosphonate), at 177,492 to 178,397
Atu0173
Atu0174: Atu0174 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 178,483 to 179,343
Atu0174
Atu0175: Atu0175 - acetyltransferase, at 179,560 to 180,177
Atu0175
Atu0176: Atu0176 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,174 to 180,881
Atu0176
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 177.567 kb on + strand at 177.578 kb on + strand at 177.586 kb on - strand, within Atu0173 at 177.586 kb on - strand, within Atu0173 at 177.601 kb on + strand, within Atu0173 at 177.714 kb on - strand, within Atu0173 at 177.758 kb on + strand, within Atu0173 at 177.775 kb on + strand, within Atu0173 at 177.866 kb on - strand, within Atu0173 at 177.997 kb on + strand, within Atu0173 at 178.107 kb on - strand, within Atu0173 at 178.181 kb on + strand, within Atu0173 at 178.183 kb on - strand, within Atu0173 at 178.240 kb on + strand, within Atu0173 at 178.248 kb on - strand, within Atu0173 at 178.248 kb on - strand, within Atu0173 at 178.256 kb on - strand, within Atu0173 at 178.256 kb on - strand, within Atu0173 at 178.261 kb on + strand, within Atu0173 at 178.321 kb on + strand at 178.322 kb on - strand at 178.338 kb on - strand at 178.340 kb on + strand at 178.418 kb on - strand at 178.458 kb on + strand at 178.476 kb on - strand at 178.486 kb on - strand at 178.506 kb on - strand at 178.530 kb on - strand at 178.671 kb on + strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.757 kb on - strand, within Atu0174 at 178.774 kb on + strand, within Atu0174 at 178.845 kb on - strand, within Atu0174 at 178.845 kb on - strand, within Atu0174 at 178.866 kb on - strand, within Atu0174 at 178.896 kb on - strand, within Atu0174 at 178.919 kb on + strand, within Atu0174 at 179.005 kb on + strand, within Atu0174 at 179.039 kb on + strand, within Atu0174 at 179.048 kb on + strand, within Atu0174 at 179.146 kb on + strand, within Atu0174 at 179.265 kb on + strand at 179.289 kb on + strand at 179.312 kb on - strand at 179.331 kb on + strand at 179.369 kb on + strand at 179.448 kb on + strand at 179.456 kb on - strand at 179.512 kb on + strand at 179.527 kb on - strand at 179.631 kb on - strand, within Atu0175 at 179.636 kb on - strand, within Atu0175 at 179.646 kb on - strand, within Atu0175 at 179.646 kb on - strand, within Atu0175 at 179.663 kb on + strand, within Atu0175 at 179.763 kb on + strand, within Atu0175 at 179.763 kb on + strand, within Atu0175 at 179.765 kb on - strand, within Atu0175 at 179.775 kb on + strand, within Atu0175 at 179.791 kb on - strand, within Atu0175 at 179.817 kb on + strand, within Atu0175 at 179.926 kb on + strand, within Atu0175 at 179.935 kb on + strand, within Atu0175 at 179.979 kb on + strand, within Atu0175 at 180.045 kb on - strand, within Atu0175 at 180.052 kb on - strand, within Atu0175 at 180.072 kb on + strand, within Atu0175 at 180.165 kb on + strand at 180.225 kb on + strand at 180.267 kb on - strand, within Atu0176 at 180.301 kb on + strand, within Atu0176 at 180.305 kb on - strand, within Atu0176
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 177,567 + -0.2 177,578 + -0.3 177,586 - Atu0173 0.10 -2.6 177,586 - Atu0173 0.10 +0.3 177,601 + Atu0173 0.12 +0.6 177,714 - Atu0173 0.25 +1.9 177,758 + Atu0173 0.29 +0.1 177,775 + Atu0173 0.31 +0.1 177,866 - Atu0173 0.41 +0.4 177,997 + Atu0173 0.56 -0.9 178,107 - Atu0173 0.68 +1.8 178,181 + Atu0173 0.76 -1.1 178,183 - Atu0173 0.76 -0.1 178,240 + Atu0173 0.83 -0.8 178,248 - Atu0173 0.83 +1.0 178,248 - Atu0173 0.83 +0.3 178,256 - Atu0173 0.84 +0.3 178,256 - Atu0173 0.84 +0.0 178,261 + Atu0173 0.85 -0.6 178,321 + +0.8 178,322 - -1.2 178,338 - -0.4 178,340 + +0.6 178,418 - -1.9 178,458 + -0.0 178,476 - -0.2 178,486 - +0.9 178,506 - -0.7 178,530 - -3.1 178,671 + Atu0174 0.22 -2.8 178,681 - Atu0174 0.23 +1.0 178,681 - Atu0174 0.23 +0.6 178,681 - Atu0174 0.23 +1.9 178,757 - Atu0174 0.32 -1.2 178,774 + Atu0174 0.34 -0.3 178,845 - Atu0174 0.42 +0.2 178,845 - Atu0174 0.42 +0.3 178,866 - Atu0174 0.44 -1.0 178,896 - Atu0174 0.48 -1.7 178,919 + Atu0174 0.51 -0.5 179,005 + Atu0174 0.61 +0.9 179,039 + Atu0174 0.65 +3.2 179,048 + Atu0174 0.66 -0.4 179,146 + Atu0174 0.77 -0.6 179,265 + -2.6 179,289 + -0.1 179,312 - -0.1 179,331 + +1.4 179,369 + +0.8 179,448 + -0.1 179,456 - +1.4 179,512 + +0.7 179,527 - -0.2 179,631 - Atu0175 0.11 -0.4 179,636 - Atu0175 0.12 -0.4 179,646 - Atu0175 0.14 -3.1 179,646 - Atu0175 0.14 +0.4 179,663 + Atu0175 0.17 +0.1 179,763 + Atu0175 0.33 -3.3 179,763 + Atu0175 0.33 -0.6 179,765 - Atu0175 0.33 +0.5 179,775 + Atu0175 0.35 -1.4 179,791 - Atu0175 0.37 -1.0 179,817 + Atu0175 0.42 +0.1 179,926 + Atu0175 0.59 +0.1 179,935 + Atu0175 0.61 +0.5 179,979 + Atu0175 0.68 -0.9 180,045 - Atu0175 0.78 -1.4 180,052 - Atu0175 0.80 +0.3 180,072 + Atu0175 0.83 -3.5 180,165 + +0.0 180,225 + -0.1 180,267 - Atu0176 0.13 -1.2 180,301 + Atu0176 0.18 +0.1 180,305 - Atu0176 0.19 +0.4
Or see this region's nucleotide sequence